View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_37 (Length: 306)
Name: NF4014_high_37
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 36087136 - 36086860
Alignment:
| Q |
12 |
gaagaagaagaaagagttactgatcatgaaacttccttagagcaaacaaattgtaaaaaatcagttgatactcttatcgatcatcaagaagtgaagaaga |
111 |
Q |
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| T |
36087136 |
gaagaagaagaaagagttactgatcatgaaacttccttagagcaaacaaattataaaaagccagttgatactcttatcgatcatcaagaagtgaagaaga |
36087037 |
T |
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| Q |
112 |
ttttggctaattggagacaaaggaagaatatacaaagtgaaagaggagtcgctcgactcaaacttgagcaaattcaaaatactgctcgttttagtgagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36087036 |
ttttggctaattggagacaaaggaagaatatacaaagtgaaagagaaatcgctcgactcaaacttgagcaaattcaaaacactgctcgttttagtgagaa |
36086937 |
T |
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| Q |
212 |
catagattctatgtatgatattcacaagctcatgggagtttccttcaattgttattagagaatacttttttcttaat |
288 |
Q |
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| T |
36086936 |
catagattctatgtatgatattcacaagctcatgggagtttccttcaattgttattagagaatacttttttcttaat |
36086860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 36093129 - 36092852
Alignment:
| Q |
12 |
gaagaagaagaaagagttactgatcatgaaacttccttagagcaaacaaattgtaaaaaatcagttgatactcttatcgatcatcaagaagtgaagaaga |
111 |
Q |
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| T |
36093129 |
gaagaagaagaaagagttactgatcatgaaacttccttagagcaaacaaattataaaaaatcagttgactctcttatcgatcatcaagaagtgaagaaga |
36093030 |
T |
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| Q |
112 |
ttttggctaattggagacaaaggaagaatatacaaagtgaaagaggagtcgctcgactcaaacttgagcaaattcaaaatactgctcgttttagtgagaa |
211 |
Q |
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| T |
36093029 |
ttttggctaattggagacaaaggaagaatatacaaagtgaaagagaagtcgctcgactcaaacttgagcaaattcaaaacactgctcgttttagtgagaa |
36092930 |
T |
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| Q |
212 |
catagattctatgtatgatattcacaagctcatgggagtttccttcaattgttattagagaatacttttttcttaatag |
290 |
Q |
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| T |
36092929 |
catagattctatgtatgattttcacaagctcattggagtttccttcaattgttattagataatac-tttttcttaatag |
36092852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 39 - 264
Target Start/End: Complemental strand, 36090651 - 36090426
Alignment:
| Q |
39 |
gaaacttccttagagcaaacaaattgtaaaaaatcagttgatactcttatcgatcatcaagaagtgaagaagattttggctaattggagacaaaggaaga |
138 |
Q |
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|||||||| | ||||||||| |||| ||||||||||| ||| ||| |||| |||||||| |||| |||||||||||||||||| |||||| || ||||| |
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| T |
36090651 |
gaaacttcatcagagcaaacgaattataaaaaatcagctgacacttttattgatcatcatgaagctaagaagattttggctaatcggagacgaatgaaga |
36090552 |
T |
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| Q |
139 |
atatacaaagtgaaagaggagtcgctcgactcaaacttgagcaaattcaaaatactgctcgttttagtgagaacatagattctatgtatgatattcacaa |
238 |
Q |
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||| ||||| |||||||| || ||||||||||||||||||||||||| |||| |||||| |||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
36090551 |
atacacaaattgaaagagaagccgctcgactcaaacttgagcaaattaaaaacactgcttgttttagtgaaaacatggattctatgcatgatattcacaa |
36090452 |
T |
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| Q |
239 |
gctcatgggagtttccttcaattgtt |
264 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
36090451 |
gctcatgggagtttccttcatttgtt |
36090426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 36082370 - 36082192
Alignment:
| Q |
12 |
gaagaagaagaaagagttactgatcatgaaacttccttagagcaaacaaattgtaaaaaatcagttgatactcttatcgatcatcaagaagtgaagaaga |
111 |
Q |
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||||||||||||||| || |||||| |||||||| |||||||||||||||| |||||||| || ||| ||| ||||||||||||| |||||||||||| |
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| T |
36082370 |
gaagaagaagaaagaagtaatgatcaggaaacttcattagagcaaacaaattataaaaaataagctgaaacttttatcgatcatcataaagtgaagaaga |
36082271 |
T |
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| Q |
112 |
ttttggctaattggagacaaaggaagaatatacaaagtgaaagaggagtcgctcgactcaaacttgagcaaattcaaaa |
190 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36082270 |
ttttggttaattggagacaaaggaagaatatacaaagtgaaagagaagtcgctcgactcaaacttgagcaaattcaaaa |
36082192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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