View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_39 (Length: 304)

Name: NF4014_high_39
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_39
NF4014_high_39
[»] chr3 (1 HSPs)
chr3 (1-295)||(37546566-37546857)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 37546857 - 37546566
Alignment:
Q  1 agagatacagagataggggacatcattgccttactccgcccgcgagaagggctgaaatattatttttgacgcattaaaaagcaaactcatatgggaagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37546857 agagatacagagataggggacatcattgccttactccgcccgcgagaagggctgaaatattatttttgacgcattaaaaagcaaactcatatgggaagta 37546758  T
Q  101 gatatacaagccttcaaaatctcaatataatcacctattatcaccaaactcagcctcatgctaagtgtctaatagaaaacccaccttactcgatcatagt 200  Q
    ||||||||||||||||||||||||||||| |      || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37546757 gatatacaagccttcaaaatctcaatatagtagg---ttttcaccaaactcagcctcatgctgagtgtctaatagaaaacccaccttactcgatcatagt 37546661  T
Q  201 aggttttctctatatccactttgatagcaacatacctctttgataacccacaaatatgttcgttaatacctttacttttttccctaaatattctt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37546660 aggttttctctatatccactttgatagcaacatacctctttgataacccacaaatatgttggttaatacctttacttttttccctaaatattctt 37546566  T

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