View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_4 (Length: 583)

Name: NF4014_high_4
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_4
NF4014_high_4
[»] chr6 (3 HSPs)
chr6 (23-580)||(26615910-26616466)
chr6 (23-580)||(26721838-26722394)
chr6 (486-565)||(16856604-16856683)
[»] chr2 (2 HSPs)
chr2 (379-484)||(653442-653548)
chr2 (414-488)||(40072222-40072296)
[»] chr4 (3 HSPs)
chr4 (486-570)||(43942830-43942914)
chr4 (486-565)||(22073963-22074042)
chr4 (440-488)||(22073891-22073939)
[»] chr3 (1 HSPs)
chr3 (486-570)||(5885023-5885107)
[»] scaffold0182 (1 HSPs)
scaffold0182 (486-570)||(10769-10853)
[»] chr1 (1 HSPs)
chr1 (439-488)||(51167539-51167588)
[»] chr5 (1 HSPs)
chr5 (387-487)||(27280962-27281061)


Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 23 - 580
Target Start/End: Complemental strand, 26616466 - 26615910
Alignment:
Q  23 gggttatggtggaggaggatgcgtcaatcgttattggcgatggtggtgcgtcgtttgttgaaatacttgttgaggnnnnnnntattgacatgggagaaga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||    
T  26616466 gggttatggtggaggaggatgcgtcaatcgttattggcgatggtggtgcgtcgtttgttgaaatacttgtcgaggaaaaaaatattgacatgggagaaga 26616367  T
Q  123 gctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttggttttaaataagaaatgttagggtatttttatcaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26616366 gctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttgtttttaaataagaaatgttagggtatttttatcaa 26616267  T
Q  223 catttattttagtggtnnnnnnngactatcaacatttttgtaaccgnnnnnnnnnctattatccttcaccttatttaatttaatgctacaacaaagacca 322  Q
    ||||||||||||||||       |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  26616266 catttattttagtggtaaaaaaagactatcaacatttttgtaaccg-aaaaaaaactattatccttcaccttatttaatttaatgctacaacaaagacca 26616168  T
Q  323 atttaaacataggataacacgaatgtggaatactattannnnnnnnnnnnnnattccataactgatatttcttaactatgaccattcatttactcattat 422  Q
    ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616167 atttaaacataggataacacgaatgtggaatactattattttttatttttttattccataactgatatttcttaactatgaccattcatttactcattat 26616068  T
Q  423 atatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttgggttttgttcgtcacca 522  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616067 atatacaaccactaatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttgggttttgttcgtcacca 26615968  T
Q  523 cattcaattaacaattgattaggtcatcttcaattttgtattattgttcatctcactc 580  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||    
T  26615967 cattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactc 26615910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 23 - 580
Target Start/End: Complemental strand, 26722394 - 26721838
Alignment:
Q  23 gggttatggtggaggaggatgcgtcaatcgttattggcgatggtggtgcgtcgtttgttgaaatacttgttgaggnnnnnnntattgacatgggagaaga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||    
T  26722394 gggttatggtggaggaggatgcgtcaatcgttattggcgatggtggtgcgtcgtttgttgaaatacttgtcgaggaaaaaaatattgacatgggagaaga 26722295  T
Q  123 gctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttggttttaaataagaaatgttagggtatttttatcaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26722294 gctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttgtttttaaataagaaatgttagggtatttttatcaa 26722195  T
Q  223 catttattttagtggtnnnnnnngactatcaacatttttgtaaccgnnnnnnnnnctattatccttcaccttatttaatttaatgctacaacaaagacca 322  Q
    ||||||||||||||||       |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  26722194 catttattttagtggtaaaaaaagactatcaacatttttgtaaccg-aaaaaaaactattatccttcaccttatttaatttaatgctacaacaaagacca 26722096  T
Q  323 atttaaacataggataacacgaatgtggaatactattannnnnnnnnnnnnnattccataactgatatttcttaactatgaccattcatttactcattat 422  Q
    ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722095 atttaaacataggataacacgaatgtggaatactattattttttatttttttattccataactgatatttcttaactatgaccattcatttactcattat 26721996  T
Q  423 atatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttgggttttgttcgtcacca 522  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721995 atatacaaccactaatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttgggttttgttcgtcacca 26721896  T
Q  523 cattcaattaacaattgattaggtcatcttcaattttgtattattgttcatctcactc 580  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||    
T  26721895 cattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactc 26721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 565
Target Start/End: Original strand, 16856604 - 16856683
Alignment:
Q  486 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtatta 565  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  |||||||| |||| ||||||||||| ||||||||    
T  16856604 attttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatattgtatta 16856683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 484
Target Start/End: Complemental strand, 653548 - 653442
Alignment:
Q  379 cataactgatatttcttaactatgaccattcatttactcattatatatacaaccactgatatgatctctata-tttttaatttctactgatgagactatt 477  Q
    ||||||| ||||||||||||||  | |||||| | ||||||||||||||| |||||| |||||||||| ||| |||||  ||||||||||||||||||||    
T  653548 cataactcatatttcttaactagaaacattcactcactcattatatatactaccactaatatgatctccatatttttttgtttctactgatgagactatt 653449  T
Q  478 tgtccta 484  Q
    |||||||    
T  653448 tgtccta 653442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 40072296 - 40072222
Alignment:
Q  414 actcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacatt 488  Q
    |||||||||| ||| ||||||| ||||||| || ||||||  | |||||||| || |||||||||||||||||||    
T  40072296 actcattatacatagaaccactaatatgatatcaatatttaaagtttctactaattagactatttgtcctacatt 40072222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 570
Target Start/End: Original strand, 43942830 - 43942914
Alignment:
Q  486 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 570  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||||||| ||||    
T  43942830 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtt 43942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 565
Target Start/End: Original strand, 22073963 - 22074042
Alignment:
Q  486 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtatta 565  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||  ||||||||  ||  ||||||||||||||| ||||    
T  22073963 attttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaatta 22074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 22073891 - 22073939
Alignment:
Q  440 tgatctctatatttttaatttctactgatgagactatttgtcctacatt 488  Q
    ||||||| ||||||||| |||||| ||||| ||||||||||| ||||||    
T  22073891 tgatctcaatatttttagtttctattgatgtgactatttgtcttacatt 22073939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 570
Target Start/End: Complemental strand, 5885107 - 5885023
Alignment:
Q  486 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 570  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||||||| ||||    
T  5885107 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtt 5885023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 486 - 570
Target Start/End: Complemental strand, 10853 - 10769
Alignment:
Q  486 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 570  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||| ||| ||||    
T  10853 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtcttactgtt 10769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 51167588 - 51167539
Alignment:
Q  439 atgatctctatatttttaatttctactgatgagactatttgtcctacatt 488  Q
    |||||||| |||| |||| |||||||| | ||||||||||||||||||||    
T  51167588 atgatctcaatatatttagtttctactaaggagactatttgtcctacatt 51167539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 27281061 - 27280962
Alignment:
Q  387 atatttcttaactatgaccattcatttactcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctaca 486  Q
    ||||||||||| ||| |  ||||| | ||| |||||||||||||||||| |||||  ||| ||||||||  |||||| | || ||| |||||||||||||    
T  27281061 atatttcttaaatataattattcactcacttattatatatacaaccactaatatgtactcaatattttt-ttttctaataataagattatttgtcctaca 27280963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University