View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_42 (Length: 300)
Name: NF4014_high_42
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 3215040 - 3215312
Alignment:
| Q |
11 |
caaaggagattaccaaaggatttaaattacgtaagacccataatttcattgtaactattaagagagtttggcttaaatttcattgaagtaagctcgaaga |
110 |
Q |
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| T |
3215040 |
caaaggagattaccaaaggatttaaattacgtaagacccataatttcattgtaactattaagagagtttggcttaaatttcattgaagtaagctcgaaga |
3215139 |
T |
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| Q |
111 |
ttacaatgcacgttttcatactcttcaatacttacatttattccttaatataatagtatcatgctatgattaatttcttttgccaaattttcacacaaaa |
210 |
Q |
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| T |
3215140 |
ttacaatgcacgttttcatactcttcaatacttacatttattccttaatataatagtatcatgctatgattaatttcttttgccaaattttcacacaaaa |
3215239 |
T |
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| Q |
211 |
atgacagatatagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttat |
283 |
Q |
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| T |
3215240 |
atgacagatatagggattctaacggtatactttccagaaacccacttgatagatccctgagaaatttccttat |
3215312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 3201265 - 3201390
Alignment:
| Q |
146 |
atttattccttaatataatagtatcatgctatgattaatttcttttgccaaattttcacacaaaaatgacagatatagggattctaacggtatactttcc |
245 |
Q |
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| T |
3201265 |
atttattccttaacataataatgtcatgctctaattaatttattttgccacattttcacacaaatacgacagcaataggaatgctaacagaatactttgc |
3201364 |
T |
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| Q |
246 |
agaaacccacttgatagatccctgag |
271 |
Q |
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| T |
3201365 |
agaaatccacttgatagatccttgag |
3201390 |
T |
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