View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_43 (Length: 300)
Name: NF4014_high_43
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 30903855 - 30903556
Alignment:
| Q |
1 |
tcaactattggattgagaaattatcaaattctaacgcactaatcatcctagaccaatacgcaaaacaacgatgagtaaaagtatgatgtactattatcta |
100 |
Q |
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| T |
30903855 |
tcaactattggattgagaaattatcaaattctaacgcactaatcatcctagaccaatacgcaaaacaacgatgagtaaaagtatgatgtactattatcta |
30903756 |
T |
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| Q |
101 |
gtcacttaagtaactcatcagttaccactagtagnnnnnnnnngcttggtacaatgttgttggtactaattgtttactacagtagaaactagagagtaga |
200 |
Q |
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| T |
30903755 |
gtcacttaagtaactcatcagttaccactagtagtttctttttgcttggtacaatgttgttggtattaattgtttactacagtagaaactagagagtaga |
30903656 |
T |
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| Q |
201 |
aactgccaccgcgtgcaatatgtaatttttatgcgaaagcgtgaaaccgagttaagctatttgcgaagggtaaggtttagtattgaaaatgggagttcga |
300 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| || ||||||| ||||||| |
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| T |
30903655 |
aactgccaccgcatgcaatatgtaatttttatgtgaaagcgtgaaaccgagttaagctatttgcgaagagtggggtttagcatagaaaatgaaagttcga |
30903556 |
T |
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