View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_48 (Length: 283)

Name: NF4014_high_48
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_48
NF4014_high_48
[»] chr3 (20 HSPs)
chr3 (188-265)||(6822363-6822440)
chr3 (183-263)||(6510694-6510774)
chr3 (52-146)||(6418291-6418384)
chr3 (53-138)||(6822463-6822548)
chr3 (53-132)||(7575908-7575987)
chr3 (199-265)||(6552092-6552158)
chr3 (78-143)||(6552162-6552226)
chr3 (56-144)||(6471854-6471941)
chr3 (56-144)||(6749803-6749890)
chr3 (78-146)||(7588769-7588835)
chr3 (199-257)||(7588858-7588917)
chr3 (100-146)||(6510781-6510827)
chr3 (201-263)||(6584664-6584726)
chr3 (1-40)||(7588676-7588715)
chr3 (183-237)||(6418231-6418285)
chr3 (199-257)||(6471758-6471816)
chr3 (199-257)||(6749928-6749986)
chr3 (224-265)||(6950436-6950477)
chr3 (76-144)||(6584761-6584828)
chr3 (1-37)||(6950278-6950314)
[»] scaffold0425 (2 HSPs)
scaffold0425 (183-267)||(5038-5122)
scaffold0425 (78-146)||(5129-5196)
[»] scaffold0445 (2 HSPs)
scaffold0445 (93-146)||(8776-8829)
scaffold0445 (183-265)||(8836-8927)
[»] scaffold2089 (2 HSPs)
scaffold2089 (1-75)||(928-1002)
scaffold2089 (100-146)||(877-923)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 6822440 - 6822363
Alignment:
Q  188 tactaagtttcaaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatctgccaaaga 265  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  6822440 tactaagattcaaagagagaaattacttgaaagtgaatggaagaaacaaagtgaagaacttgaaagatcacccaaaga 6822363  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 6510774 - 6510694
Alignment:
Q  183 gtgtttactaagtttcaaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatctgccaaa 263  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  6510774 gtgtttagtaagatttaaagagagaaattacttgaaagtgagtggaacaaacaaagtgaaaaacttgaaagatctcccaaa 6510694  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 6418384 - 6418291
Alignment:
Q  52 caaactgagatctgccaaggaaatgtagaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    |||||| |||||||||||||||||  ||||  |||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  6418384 caaacttagatctgccaaggaaatagagaactatttagag-gcaatataaaatatgtgaaatatgaaatttgagtaacaatggaaattaagagta 6418291  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 6822548 - 6822463
Alignment:
Q  53 aaactgagatctgccaaggaaatgtagaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaat 138  Q
    |||||||||||||||||||||||  ||||||||| |||| |||||||||||||||| |||||||| ||||||| || |||||||||    
T  6822548 aaactgagatctgccaaggaaataaagaaagattcagagggaaatataaaatatgtcaaatatgagatttgagcaaaaacggaaat 6822463  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 7575908 - 7575987
Alignment:
Q  53 aaactgagatctgccaaggaaatgtagaaagatttagagcgaaatataaa-atatgtgaaatatgaaatttgagtaacaac 132  Q
    ||||||||||||| ||||||||| ||||||||||||||| | |||| ||| | ||||||||||||||||||||||||||||    
T  7575908 aaactgagatctgacaaggaaatatagaaagatttagag-gcaataaaaataaatgtgaaatatgaaatttgagtaacaac 7575987  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 6552158 - 6552092
Alignment:
Q  199 aaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatctgccaaaga 265  Q
    ||||||| || ||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||    
T  6552158 aaagagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaaga 6552092  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 6552226 - 6552162
Alignment:
Q  78 agaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaaga 143  Q
    |||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  6552226 agaaagatttagag-gcaatataaaaaatatgaaatatgaaatttgagtaacaacggaaattaaga 6552162  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 6471941 - 6471854
Alignment:
Q  56 ctgagatctgccaaggaaatgtagaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagag 144  Q
    ||||||||||||||||||||  | ||| |||||||| | |||||||||||||| |||||||||||| ||||| ||||| |||| |||||    
T  6471941 ctgagatctgccaaggaaataaaaaaatatttagag-gcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagag 6471854  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 6749803 - 6749890
Alignment:
Q  56 ctgagatctgccaaggaaatgtagaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagag 144  Q
    ||||||||||||||||||||  | ||| |||||||| | |||||||||||||| |||||||||||| ||||| ||||| |||| |||||    
T  6749803 ctgagatctgccaaggaaataaaaaaatatttagag-gcaatataaaatatgtcaaatatgaaattagagtaccaacgaaaattaagag 6749890  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 7588769 - 7588835
Alignment:
Q  78 agaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    |||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| |||||||    
T  7588769 agaaagatttagag-gaaatataaaatatg-gcaacatgaaatttgagtaacaacggaaattaagagta 7588835  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 7588858 - 7588917
Alignment:
Q  199 aaagagagaaattacttgaaagtgagtggaagaaacaaagtg-aagaacttgaaagatct 257  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||||||||||||||    
T  7588858 aaagagagaaattacttgaaagtgagtggaacaatgaaagtgaaagaacttgaaagatct 7588917  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 6510827 - 6510781
Alignment:
Q  100 aaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||    
T  6510827 aaaaaatgtgaaatatgaaatttgagtaaaaacggaaataaagagta 6510781  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 6584726 - 6584664
Alignment:
Q  201 agagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatctgccaaa 263  Q
    |||||||||||||||||||||| |||||| |||||||  |||||||| |||| |||| |||||    
T  6584726 agagagaaattacttgaaagtgtgtggaacaaacaaaccgaagaactcgaaaaatctcccaaa 6584664  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7588676 - 7588715
Alignment:
Q  1 tacctgtaagtgtgagaacaaacaagctaagatctttgtc 40  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  7588676 tacctgaaagtgtgagaacaaacaaactaagatctttgtc 7588715  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 6418285 - 6418231
Alignment:
Q  183 gtgtttactaagtttcaaagagagaaattacttgaaagtgagtggaagaaacaaa 237  Q
    |||||||||||| |  ||||||||||||||||| |||||| |||||| |||||||    
T  6418285 gtgtttactaagatctaaagagagaaattactttaaagtgtgtggaacaaacaaa 6418231  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 6471816 - 6471758
Alignment:
Q  199 aaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatct 257  Q
    ||||||||||||||| |||||||| || ||| ||||||| |||||||||| | ||||||    
T  6471816 aaagagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatct 6471758  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 6749928 - 6749986
Alignment:
Q  199 aaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatct 257  Q
    ||||||||||||||| |||||||| || ||| ||||||| |||||||||| | ||||||    
T  6749928 aaagagagaaattacatgaaagtgtgtagaacaaacaaactgaagaactttagagatct 6749986  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 6950436 - 6950477
Alignment:
Q  224 gtggaagaaacaaagtgaagaacttgaaagatctgccaaaga 265  Q
    |||||| ||| ||||||||||||||||||||||| |||||||    
T  6950436 gtggaacaaagaaagtgaagaacttgaaagatctcccaaaga 6950477  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 6584828 - 6584761
Alignment:
Q  76 gtagaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagag 144  Q
    ||||| |||||||||| |||||||||||||||  ||||| |||||||||||| ||| | |||| |||||    
T  6584828 gtagagagatttagag-gaaatataaaatatgccaaatacgaaatttgagtaccaaagtaaattaagag 6584761  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6950278 - 6950314
Alignment:
Q  1 tacctgtaagtgtgagaacaaacaagctaagatcttt 37  Q
    |||||| |||||||||||||||||| |||||||||||    
T  6950278 tacctgaaagtgtgagaacaaacaaactaagatcttt 6950314  T

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Target: scaffold0425 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 5122 - 5038
Alignment:
Q  183 gtgtttactaagtttcaaagagagaaattacttgaaagtgagtggaagaaacaaagtgaagaacttgaaagatctgccaaagata 267  Q
    |||||||||||| || ||||||| || ||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||||    
T  5122 gtgtttactaagatttaaagagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaagata 5038  T

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Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 5196 - 5129
Alignment:
Q  78 agaaagatttagagcgaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    |||||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||| |||||||    
T  5196 agaaagatttagag-gcaatataaaaaatatgaaatatgaaatttgagtaacaacggaaattaagagta 5129  T

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Target: scaffold0445 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 8776 - 8829
Alignment:
Q  93 gaaatataaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  8776 gaaatataaaaaatgtgaaatatgaaatttgagtaacaacggaaattaagagta 8829  T

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Target: scaffold0445; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 8836 - 8927
Alignment:
Q  183 gtgtttactaagtttcaaagagagaaattacttgaaagtgag---------tggaagaaacaaagtgaagaacttgaaagatctgccaaaga 265  Q
    ||||||||| || || ||||||||||||||||||||||||||         ||||||||| |||||||||||||| |||||||| |||||||    
T  8836 gtgtttactgagatttaaagagagaaattacttgaaagtgagtgactggaatggaagaaagaaagtgaagaacttaaaagatctcccaaaga 8927  T

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Target: scaffold2089 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1002 - 928
Alignment:
Q  1 tacctgtaagtgtgagaacaaacaagctaagatctttgtcnnnnnnnccaccaaactgagatctgccaaggaaat 75  Q
    |||||| |||||||||||||||||| |||||||||||||        ||||||||||||||||||||||||||||    
T  1002 tacctgaaagtgtgagaacaaacaaactaagatctttgtaaaaaaaaccaccaaactgagatctgccaaggaaat 928  T

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Target: scaffold2089; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 923 - 877
Alignment:
Q  100 aaaatatgtgaaatatgaaatttgagtaacaacggaaataaagagta 146  Q
    |||| ||||||||||||||||||||||||||||| |||| |||||||    
T  923 aaaaaatgtgaaatatgaaatttgagtaacaacgtaaattaagagta 877  T

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