View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_69 (Length: 240)
Name: NF4014_high_69
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_69 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 25630705 - 25630483
Alignment:
| Q |
18 |
aaatgtcaagactatgacagtgagacaagtttaaatatgcttgatggtaaagcctcttgatggaataggaagtgcaattaagttatttccttgtagattt |
117 |
Q |
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| T |
25630705 |
aaatgtcaagactttgacagtgagaaaagtttaaatatgcttgatggtaaagcctcttgatggaataggaagtgcaattaagttatttccttgtagattt |
25630606 |
T |
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| Q |
118 |
ggtctttctaaacaccttaagagatgtcatattgtcaaagctatcaggtattctgaaaagatttgtgcagcctctcaaacctaagaatctaagctttgtc |
217 |
Q |
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| T |
25630605 |
ggtctttctaaacaccttaagagatgtcatattgttaaagctatcaggtattctgaaaagatttgtgcagcctctcaaacctaagaatctaagctttgtc |
25630506 |
T |
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| Q |
218 |
aagatactcaaaatttaataaac |
240 |
Q |
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| T |
25630505 |
aagatactcaagatttaataaac |
25630483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 25641325 - 25641251
Alignment:
| Q |
142 |
tgtcatattgtcaaagctatcaggtattctgaaaagatttgtgcagcctctcaaacctaagaatctaagctttgt |
216 |
Q |
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| T |
25641325 |
tgtcatattgttaaagctgtcaggtatgatgacaagatttgtgcagcctctcaaacttaagaatctaagctttgt |
25641251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 25432676 - 25432729
Alignment:
| Q |
84 |
aggaagtgcaattaagttatttccttgtagatttggtctttctaaacaccttaa |
137 |
Q |
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| T |
25432676 |
aggaagtgtagtgaagttatttccctgaagatttagtctttctaaacaccttaa |
25432729 |
T |
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