View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_high_73 (Length: 239)
Name: NF4014_high_73
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_high_73 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9300755 - 9300519
Alignment:
| Q |
1 |
agggagtgaagattcaaagccttggggttcttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtc |
100 |
Q |
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| T |
9300755 |
agggtgtgaagattcaaagccttggggttgttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtc |
9300656 |
T |
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| Q |
101 |
tagttgtaggaaatagcaagagagaggacaagtctgatgatgacaagttcgatgacatggtagaatgtctca-taaaatcaaaatcttgcagttggtgaa |
199 |
Q |
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| T |
9300655 |
tagttgtaggaaatagcaagagagaggaaaagtctgatggtgacaagtttgatgacatggtagaatgtctcattaaaatcaaaatcttgcagttggtgaa |
9300556 |
T |
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| Q |
200 |
accctttagccactaaacgtgcattgagcctattgac |
236 |
Q |
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| T |
9300555 |
accctttagccactaaacgtgcattgagcctattgac |
9300519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 32457892 - 32457955
Alignment:
| Q |
59 |
ccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtaggaaatagcaagag |
122 |
Q |
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| T |
32457892 |
ccatttaagaaggcattattgacatccagctgttgaataggccacttgtaggaaatagcaagag |
32457955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 3218917 - 3218829
Alignment:
| Q |
14 |
tcaaagccttggggttcttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtcta |
102 |
Q |
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||||||||||| |||| ||||| ||| ||||| ||| | | ||||||||||||| |||||||| ||||| ||||| ||||||||||| |
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| T |
3218917 |
tcaaagccttgtggttgttgcatgtatacttcttcaccaagggtgccatttaagaaagcattattaacatctagttgctgaatagtcta |
3218829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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