View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_high_9 (Length: 541)

Name: NF4014_high_9
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_high_9
NF4014_high_9
[»] chr4 (48 HSPs)
chr4 (254-524)||(48189330-48189604)
chr4 (110-252)||(1913733-1913893)
chr4 (21-85)||(12439205-12439269)
chr4 (117-251)||(1874001-1874151)
chr4 (1-75)||(42404821-42404895)
chr4 (110-251)||(12659191-12659350)
chr4 (1-75)||(917194-917268)
chr4 (113-251)||(910852-911005)
chr4 (113-252)||(30679797-30679952)
chr4 (1-75)||(12435253-12435327)
chr4 (1-71)||(30679688-30679758)
chr4 (113-195)||(25697331-25697411)
chr4 (113-251)||(25687563-25687717)
chr4 (113-251)||(30673704-30673858)
chr4 (119-251)||(18890002-18890150)
chr4 (119-251)||(16325727-16325877)
chr4 (119-251)||(16334771-16334921)
chr4 (116-194)||(23188038-23188114)
chr4 (32-85)||(25697251-25697303)
chr4 (195-251)||(23200526-23200582)
chr4 (145-252)||(42404642-42404766)
chr4 (145-251)||(12435382-12435505)
chr4 (145-251)||(42411107-42411230)
chr4 (21-75)||(48305270-48305324)
chr4 (145-194)||(917324-917373)
chr4 (33-85)||(1913656-1913708)
chr4 (195-251)||(23187963-23188019)
chr4 (195-251)||(29333637-29333693)
chr4 (195-249)||(25697429-25697483)
chr4 (110-194)||(12439294-12439376)
chr4 (195-251)||(917391-917447)
chr4 (45-85)||(23188145-23188185)
chr4 (113-194)||(12665712-12665786)
chr4 (51-85)||(12428826-12428860)
chr4 (144-194)||(12428917-12428967)
chr4 (195-249)||(12439395-12439449)
chr4 (51-85)||(25687501-25687535)
chr4 (145-194)||(29333711-29333760)
chr4 (40-85)||(33360114-33360158)
chr4 (147-195)||(4393790-4393838)
chr4 (195-251)||(12428986-12429042)
chr4 (116-194)||(23200601-23200677)
chr4 (117-186)||(55325565-55325631)
chr4 (141-187)||(33360213-33360259)
chr4 (197-251)||(48305445-48305499)
chr4 (198-252)||(55325478-55325532)
chr4 (214-251)||(42119858-42119895)
chr4 (39-75)||(12665641-12665677)
[»] chr3 (24 HSPs)
chr3 (110-258)||(49491221-49491387)
chr3 (113-251)||(49486727-49486883)
chr3 (113-252)||(21473103-21473260)
chr3 (113-251)||(15752502-15752658)
chr3 (113-251)||(15758295-15758451)
chr3 (113-194)||(21453235-21453316)
chr3 (113-194)||(21458409-21458490)
chr3 (1-75)||(15758186-15758260)
chr3 (3-75)||(21473295-21473367)
chr3 (119-194)||(21883499-21883574)
chr3 (119-251)||(2978246-2978394)
chr3 (119-251)||(2982190-2982338)
chr3 (119-252)||(21877163-21877314)
chr3 (113-171)||(21477589-21477647)
chr3 (32-85)||(21453341-21453394)
chr3 (32-75)||(49491161-49491204)
chr3 (21-75)||(2982095-2982149)
chr3 (195-251)||(21453160-21453216)
chr3 (195-251)||(21458334-21458390)
chr3 (31-75)||(21877359-21877403)
chr3 (51-85)||(21458515-21458549)
chr3 (195-251)||(21477492-21477547)
chr3 (195-251)||(21883424-21883480)
chr3 (53-85)||(49486670-49486702)
[»] scaffold0014 (3 HSPs)
scaffold0014 (113-251)||(111875-112031)
scaffold0014 (193-251)||(106062-106120)
scaffold0014 (33-85)||(106176-106228)
[»] chr1 (36 HSPs)
chr1 (3-251)||(31099448-31099712)
chr1 (118-195)||(27347175-27347252)
chr1 (1-85)||(39492922-39493006)
chr1 (1-75)||(7876267-7876341)
chr1 (110-195)||(11660251-11660334)
chr1 (1-75)||(28512988-28513062)
chr1 (1-75)||(38985090-38985164)
chr1 (32-253)||(18540629-18540866)
chr1 (113-251)||(18534984-18535138)
chr1 (113-251)||(31092952-31093106)
chr1 (113-252)||(35625255-35625412)
chr1 (110-194)||(38736114-38736198)
chr1 (116-194)||(37365157-37365235)
chr1 (113-195)||(11654094-11654174)
chr1 (138-251)||(28519275-28519405)
chr1 (119-187)||(7876173-7876239)
chr1 (138-194)||(28512884-28512940)
chr1 (118-251)||(37356741-37356892)
chr1 (145-260)||(38984903-38985035)
chr1 (42-85)||(11654202-11654245)
chr1 (1-75)||(37365044-37365119)
chr1 (145-251)||(38991099-38991222)
chr1 (195-254)||(27347270-27347329)
chr1 (193-252)||(38736038-38736097)
chr1 (195-251)||(11660177-11660233)
chr1 (195-251)||(37365254-37365310)
chr1 (51-85)||(11660359-11660393)
chr1 (51-85)||(27347108-27347142)
chr1 (195-252)||(7876090-7876147)
chr1 (195-252)||(39492739-39492796)
chr1 (204-252)||(11654019-11654067)
chr1 (53-85)||(18534924-18534956)
chr1 (50-85)||(31092889-31092924)
chr1 (195-256)||(28512807-28512866)
chr1 (110-186)||(39492823-39492897)
chr1 (1-41)||(39494333-39494373)
[»] chr8 (24 HSPs)
chr8 (3-252)||(30727495-30727760)
chr8 (1-75)||(21241350-21241424)
chr8 (113-195)||(30714220-30714300)
chr8 (113-195)||(30721997-30722077)
chr8 (119-256)||(37204230-37204382)
chr8 (119-251)||(37209712-37209859)
chr8 (1-61)||(27682602-27682662)
chr8 (21-75)||(37204415-37204469)
chr8 (145-194)||(21241246-21241295)
chr8 (145-194)||(21247750-21247799)
chr8 (195-252)||(27683509-27683566)
chr8 (195-251)||(27679727-27679783)
chr8 (195-251)||(30714318-30714374)
chr8 (195-251)||(30722095-30722151)
chr8 (145-194)||(27679660-27679709)
chr8 (145-194)||(27683442-27683491)
chr8 (195-251)||(21241172-21241228)
chr8 (195-251)||(21247676-21247732)
chr8 (195-255)||(26197033-26197093)
chr8 (137-194)||(24042881-24042938)
chr8 (195-251)||(26196896-26196952)
chr8 (51-85)||(30714158-30714192)
chr8 (51-85)||(30721935-30721969)
chr8 (38-75)||(27683350-27683387)
[»] chr5 (18 HSPs)
chr5 (113-251)||(35264545-35264699)
chr5 (113-251)||(35270286-35270440)
chr5 (113-251)||(23053384-23053538)
chr5 (113-251)||(23058959-23059113)
chr5 (1-75)||(21177943-21178017)
chr5 (117-251)||(16675564-16675711)
chr5 (117-195)||(21171196-21171272)
chr5 (10-75)||(23058859-23058924)
chr5 (119-194)||(25365403-25365478)
chr5 (113-195)||(39653932-39654012)
chr5 (117-195)||(21178057-21178135)
chr5 (32-85)||(35270205-35270258)
chr5 (195-251)||(21171290-21171346)
chr5 (195-256)||(21178153-21178214)
chr5 (195-251)||(25365497-25365553)
chr5 (195-251)||(39654030-39654086)
chr5 (53-85)||(39653872-39653904)
chr5 (1-55)||(29120884-29120939)
[»] chr2 (20 HSPs)
chr2 (113-251)||(19437542-19437696)
chr2 (113-254)||(25454722-25454879)
chr2 (113-194)||(43287396-43287477)
chr2 (113-194)||(43293141-43293222)
chr2 (114-194)||(24056628-24056708)
chr2 (117-195)||(25445068-25445144)
chr2 (113-251)||(19443117-19443271)
chr2 (10-75)||(19443017-19443082)
chr2 (119-251)||(24053297-24053447)
chr2 (38-85)||(43293066-43293113)
chr2 (32-85)||(25454645-25454698)
chr2 (195-251)||(25445162-25445218)
chr2 (1-75)||(24056517-24056592)
chr2 (195-256)||(43293241-43293302)
chr2 (147-191)||(8872318-8872362)
chr2 (195-251)||(43287496-43287552)
chr2 (51-85)||(25445002-25445036)
chr2 (51-85)||(43287334-43287368)
chr2 (214-251)||(31433045-31433082)
chr2 (195-251)||(24056727-24056782)
[»] scaffold0102 (3 HSPs)
scaffold0102 (113-194)||(14100-14179)
scaffold0102 (195-251)||(14025-14081)
scaffold0102 (51-85)||(14207-14241)
[»] chr7 (22 HSPs)
chr7 (10-75)||(22822717-22822782)
chr7 (114-194)||(29176619-29176697)
chr7 (114-194)||(29185598-29185676)
chr7 (3-75)||(8242731-8242803)
chr7 (1-73)||(29176735-29176807)
chr7 (119-251)||(22822537-22822684)
chr7 (119-251)||(22826840-22826987)
chr7 (119-194)||(340302-340377)
chr7 (119-194)||(346536-346611)
chr7 (21-75)||(22827020-22827074)
chr7 (139-195)||(8242615-8242671)
chr7 (198-251)||(8248110-8248163)
chr7 (139-195)||(8248184-8248240)
chr7 (29-75)||(346455-346501)
chr7 (195-253)||(29176542-29176600)
chr7 (195-256)||(346630-346691)
chr7 (198-251)||(8242541-8242594)
chr7 (117-180)||(25830398-25830459)
chr7 (214-257)||(2068845-2068888)
chr7 (195-233)||(29185541-29185579)
chr7 (214-251)||(25830510-25830547)
chr7 (195-251)||(340396-340452)
[»] chr6 (9 HSPs)
chr6 (1-73)||(23421816-23421888)
chr6 (113-256)||(18738568-18738727)
chr6 (119-194)||(33660902-33660977)
chr6 (145-194)||(23427556-23427605)
chr6 (145-194)||(23421710-23421759)
chr6 (198-253)||(33660999-33661054)
chr6 (51-85)||(18738755-18738789)
chr6 (195-251)||(23427482-23427538)
chr6 (195-252)||(23421635-23421692)
[»] scaffold0591 (3 HSPs)
scaffold0591 (119-194)||(9398-9472)
scaffold0591 (29-75)||(9509-9555)
scaffold0591 (195-251)||(9323-9379)
[»] scaffold0079 (2 HSPs)
scaffold0079 (119-194)||(58014-58089)
scaffold0079 (195-251)||(57939-57995)
[»] scaffold0258 (2 HSPs)
scaffold0258 (36-85)||(6206-6255)
scaffold0258 (213-249)||(6399-6435)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 254 - 524
Target Start/End: Original strand, 48189330 - 48189604
Alignment:
Q  254 ttttgatatattaa-gcatttttcaaaaacaaattagggaaaaataaaaaggcggcggcgaagaccgactcattgagccatactatggagat---aatcc 349  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  48189330 ttttgatatattaaagcatttttcaaaaacaaattagggaaaaataaaaaggcggcggcgaagaccgactcattgagccatactatggagatgataatcc 48189429  T
Q  350 actactctacatataactcagaactccatgcactctaccctgtttcttcaatagtgnnnnnnncccgtgcgcttttacaagactcagcggtgaaagctat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  48189430 actactctacatataactcagaactccatgcactctaccctgtttcttcaatagtgaaaaaaacccgtgcgcttttacaagactcagcggtgaaagctat 48189529  T
Q  450 aacgctgcttcaacacccactctccactattcaatctctaacccttcttcccccaattcgcttctacttcaaggt 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48189530 aacgctgcttcaacacccactctccactattcaatctctaacccttcttcccccaattcgcttctacttcaaggt 48189604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 1913733 - 1913893
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg----------------- 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||                     
T  1913733 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacc 1913832  T
Q  193 -aatagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
     |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  1913833 taatagtatggcccactaacacatttgctatttggacatccactattaatatttataacaa 1913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 12439205 - 12439269
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439205 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 12439269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 1874001 - 1874151
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aatagt 198  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||||||                  ||||||    
T  1874001 agtattcttattcactgatgtg--tatctcaatgttacaaatgagctatatttatagggaaatagagtagcctatgaattaagcccaataacataatagt 1874098  T
Q  199 atggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  1874099 atggcccactaacacatttgctatttggacatccactattaatatttataaca 1874151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42404895 - 42404821
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42404895 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 42404821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 12659191 - 12659350
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa--------------- 194  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  | |||||||||||| ||||||                   
T  12659191 tatgagcagtattcttattcactaatgtgtgtatctcagtgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacc 12659290  T
Q  195 ---tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
       |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  12659291 tagtagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 12659350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 917194 - 917268
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||    
T  917194 gaaatatattatattaatacctttttagtgattagagcgtgctggtaacgtgttatgaatataagtaaatagaga 917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 910852 - 911005
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------t 195  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| || |||||||||||| ||||||                 |    
T  910852 gagcagtattcttattcactgatctgtgtatc--aatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaaaacctagt 910949  T
Q  196 agtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  910950 agtatggcccactaacacatttgctatttggacatccaatattaatatttataaca 911005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 30679797 - 30679952
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| |||| | ||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  30679797 gagcagtattcttattcactaatgtatttatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctag 30679894  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  30679895 tagtatggcccactaacacatttgctatttggacatccactattaatatttataacaa 30679952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12435253 - 12435327
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  12435253 gaaatatattatattaatacctttttagtgattagagcgtgctgatatcttgttatgaatataagtaaatagaga 12435327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30679688 - 30679758
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaata 71  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30679688 gaaatagattgtactaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaata 30679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 25697331 - 25697411
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||||||||| | | ||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25697331 gagcagtattcttattcactgatctatatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 25697411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 25687563 - 25687717
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    ||||||||||||||||||||||| | | ||||  ||||||||||||||||||| ||||| ||||||||||||||| ||||||                      
T  25687563 gagcagtattcttattcactgatctatatatc--aatgttacaaatgagctctgtttatagggaaatagagtagcttatgaattaagcccaataaactag 25687660  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  25687661 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 25687717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 30673704 - 30673858
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| |||| | ||||  |||||||||||||| |||||||||| ||||||||||||||| ||||||                      
T  30673704 gagcagtattcttattcactaatgtatttatc--aatgttacaaatgaactctatttatagggaaatagagtagcttatgaactaagcccaataacctag 30673801  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  30673802 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 30673858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 18890150 - 18890002
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat------------------agtat 200  Q
    |||||||||||||| |||||| ||||  ||||||||||||||| ||||||||| ||||||||||||||| |||||||                  |||||    
T  18890150 tattcttattcactaatgtgtatatc--aatgttacaaatgagttctatttatagggaaatagagtagcttatgaattaagcccaataacctaatagtat 18890053  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  18890052 ggcccactaacacatttgctatttggacatccactattaatatttataaca 18890002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 16325727 - 16325877
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||                  ||||||    
T  16325727 tattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtat 16325826  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  16325827 ggcccaataacacatttgctatttggacatccactattaatatttataaca 16325877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 16334771 - 16334921
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||                  ||||||    
T  16334771 tattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagtat 16334870  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  16334871 ggcccaataacacatttgctatttggacatccactattaatatttataaca 16334921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 23188114 - 23188038
Alignment:
Q  116 cagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||| || ||| ||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23188114 cagtattcttattcacttatctgtctatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 23188038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 25697251 - 25697303
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25697251 ttagagcgtgctgataacgtgttatgaatacaag-aaatagagatgataataat 25697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 23200582 - 23200526
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  23200582 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 23200526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 42404766 - 42404642
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgctatttgga 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| ||||||||||||||    
T  42404766 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgctatttgga 42404667  T
Q  228 catccaccgttaatatttataacaa 252  Q
    ||||||   ||||||||||||||||    
T  42404666 catccaatattaatatttataacaa 42404642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 12435382 - 12435505
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgctatttgga 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| ||||||||||||||    
T  12435382 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgctatttgga 12435481  T
Q  228 catccaccgttaatatttataaca 251  Q
    ||||||   |||||||||||||||    
T  12435482 catccaatattaatatttataaca 12435505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 42411230 - 42411107
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgctatttgga 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| ||||||||||||||    
T  42411230 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgctatttgga 42411131  T
Q  228 catccaccgttaatatttataaca 251  Q
    ||||||   |||||||||||||||    
T  42411130 catccaatattaatatttataaca 42411107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 48305270 - 48305324
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  48305270 cttttcattgattagagcgtgctgataacatgttatgaatataagtaaatagaga 48305324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 917324 - 917373
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  917324 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 917373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 1913656 - 1913708
Alignment:
Q  33 tagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  1913656 tagagcgtgctgataacgtgttatgaaaataagtaaatagacatgataataat 1913708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 23188019 - 23187963
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||    
T  23188019 tagtatggtccactaacacatttgctatttggacatccactattaatatttataaca 23187963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 29333693 - 29333637
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  29333693 tagtatggcccactaacacatttgctatttggacatccaatattaatatttataaca 29333637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 25697429 - 25697483
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataa 249  Q
    |||||||||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  25697429 tagtatggcccactaacacatttgctatttggatatccactattaatatttataa 25697483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 12439294 - 12439376
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||||| ||| | |    |||| ||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  12439294 tatgagcagtattcttattcaccgatctctca--ctcactgttacaaatgagttctatttatagggaaatagagtagcttatgaa 12439376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 917391 - 917447
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||| ||||||||||||||||||||||| ||||||||   |||||||||||||||    
T  917391 tagtatagcccactaacatatttgctatttagacatccaatattaatatttataaca 917447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 23188185 - 23188145
Alignment:
Q  45 ataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  23188185 ataacgtgttatgaatacaagtaaattgagatgataataat 23188145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 12665712 - 12665786
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||| |||||||||||       ||||||||||||||||||||  | |||||||||||| ||||||    
T  12665712 gagcagtattcttattcactaatgtgtgtatc-------tacaaatgagctctatttataagaaaatagagtagcttatgaa 12665786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 12428826 - 12428860
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  12428826 tgttatgaatacaagtaaatagagatgataataat 12428860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 12428917 - 12428967
Alignment:
Q  144 ctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||| ||||||    
T  12428917 ctcactgttacaaatgagttctatttatagggaaatagagtagcttatgaa 12428967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 12439395 - 12439449
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataa 249  Q
    ||||||||||||  ||| ||||||||||||||||||||||  |||||||||||||    
T  12439395 tagtatggcccataaacctatttgctatttggacatccactattaatatttataa 12439449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 25687501 - 25687535
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  25687501 tgttatgaatacaagtaaatagagatgataataat 25687535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 29333760 - 29333711
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||| ||||||| ||||||||||||||  ||||||    
T  29333760 tcaatgttacaaatgagctttatttatagggaaatagagtaggttatgaa 29333711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 33360114 - 33360158
Alignment:
Q  40 tgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||    
T  33360114 tgctgataac-tgttatgaatacaaataaatagagatgataataat 33360158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 4393790 - 4393838
Alignment:
Q  147 aatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||| ||||||| |||||||| |||||| |||||||    
T  4393790 aatgttacaaatgagctttatttatagggaaataaagtagcttatgaat 4393838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 12428986 - 12429042
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||||  ||| |||||||| |||||||||||||  |||||||||||||||    
T  12428986 tagtatggcccataaacctatttgctctttggacatccactattaatatttataaca 12429042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 23200677 - 23200601
Alignment:
Q  116 cagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||| ||||| ||||| ||| ||||  ||||||||||||||| ||||||||| ||||| ||||||| | ||||||    
T  23200677 cagtattcgtattcgctgatctgtctatc--aatgttacaaatgagttctatttatagggaagtagagtaacttatgaa 23200601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 55325631 - 55325565
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtag 186  Q
    |||||| |||||||||||||| |   ||||||||| ||||||||||| ||||||| |||||||| |||||    
T  55325631 agtattattattcactgatgttt---tctcaatgtaacaaatgagctttatttatagggaaataaagtag 55325565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 33360213 - 33360259
Alignment:
Q  141 tatctcaatgttacaaatgagctctatttatggggaaatagagtagc 187  Q
    |||||||||||||| ||||||||||||||||  | ||||||||||||    
T  33360213 tatctcaatgttacgaatgagctctatttataagaaaatagagtagc 33360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 48305445 - 48305499
Alignment:
Q  197 gtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||| ||||   ||||||||||||||||||||  |||||||||||||||    
T  48305445 gtatggcccattaacgcgtttgctatttggacatccacttttaatatttataaca 48305499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 55325532 - 55325478
Alignment:
Q  198 tatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||| |||||||||| |||||||||||||||||| |   ||||||||||||||||    
T  55325532 tatgacccactaacacatttgctatttggacatctattattaatatttataacaa 55325478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 42119858 - 42119895
Alignment:
Q  214 atttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||||||  |||||||||||||||    
T  42119858 atttgctatttggacatccactattaatatttataaca 42119895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 12665641 - 12665677
Alignment:
Q  39 gtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||| | |||||||||||||    
T  12665641 gtgctgataacgtgttatgaaaataagtaaatagaga 12665677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 110 - 258
Target Start/End: Original strand, 49491221 - 49491387
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg----------------- 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||                     
T  49491221 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagagaaatagagtagcctatgaattaagctcaataacc 49491320  T
Q  193 -aatagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttttg 258  Q
     |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  49491321 taatagtatggcccactaacacatttgctatttggacatccactattaatatttataacaatttttg 49491387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 49486727 - 49486883
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||                  ||    
T  49486727 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagagaaatagagtagcctatgaattaagctcaataacctaa 49486826  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  49486827 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 49486883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 21473260 - 21473103
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aa 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||                  ||    
T  21473260 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagtccaataagctaa 21473161  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||    
T  21473160 tagtatggcccaataacacatttgctatttggacatccactattaatatttataacaa 21473103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 15752502 - 15752658
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||                      
T  15752502 gagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctag 15752601  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  15752602 tagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 15752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 15758295 - 15758451
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||                      
T  15758295 gagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctag 15758394  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  15758395 tagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 15758451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 21453316 - 21453235
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  21453316 gagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 21453235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 21458490 - 21458409
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  21458490 gagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 21458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15758186 - 15758260
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  15758186 gaaatatattatacgaataccttttcagtgattagagcttgctgataacgtgttatgaaaataagtaaatagaga 15758260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 21473367 - 21473295
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  21473367 aatatattatatgaataccttttcagtgattagagcgtgttgataacgtgttatgaaaataagtaaatagaga 21473295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 21883574 - 21883499
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  21883574 tattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 21883499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 2978246 - 2978394
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||||||| || |||||||||||| ||||||                  ||||||    
T  2978246 tattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagtagtat 2978343  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  2978344 ggcccactaacacatttgttatttggacatccactattaatatttataaca 2978394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 2982190 - 2982338
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    |||||||||||||| |||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||                  ||||||    
T  2982190 tattcttattcacttatgtgtatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaataacctagtagtat 2982287  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
     ||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  2982288 agcccactaacacatttgctatttggacatccactattaatatttataaca 2982338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 21877314 - 21877163
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||  | |||||||||||| ||||||                  ||||||    
T  21877314 tattcctattcactgatgtgtgtatcccaatgttacaaatgagctccatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtat 21877215  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||| ||||| |||||||||||||||||||||  ||||||||||||||||    
T  21877214 ggcccaataacacatttgctatttggacatccactattaatatttataacaa 21877163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 21477647 - 21477589
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttat 171  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||    
T  21477647 gagcagtattcttatttaccgatgtgtgtatctcaatgttacaaatgagccctatttat 21477589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 21453394 - 21453341
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21453394 ttagggcgtgctaataacgtgttatgaatacaagtaaatagagatgataataat 21453341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 49491161 - 49491204
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49491161 ttagagcgtgctgataacgtgttatgaatacaagtaaatagaga 49491204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 2982095 - 2982149
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  2982095 cttttcggtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 2982149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21453216 - 21453160
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  21453216 tagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 21453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21458390 - 21458334
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  21458390 tagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 21458334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 21877403 - 21877359
Alignment:
Q  31 attagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  21877403 attagagcgtgctgataacgtgttatgaaaataagtaaatagaga 21877359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 21458549 - 21458515
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  21458549 tgttatgaatacaagtaaatagagatgataataat 21458515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21477547 - 21477492
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| ||| |||||||||||||||||  |||||||||||||||    
T  21477547 tagtatggcccaataacacatt-gctatttggacatccactattaatatttataaca 21477492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21883480 - 21883424
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||| || ||||| ||||||||||||||||||| |  |||||||||||||||    
T  21883480 tagtatggctcaataacacatttgctatttggacatccgctattaatatttataaca 21883424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 49486670 - 49486702
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  49486670 ttatgaatacaagtaaatagagatgataataat 49486702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 112031 - 111875
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aa 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||                  ||    
T  112031 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgaactctatttatagggaaatagagtagcctatgaattaagcccaataacctaa 111932  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  111931 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 111875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 106120 - 106062
Alignment:
Q  193 aatagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  106120 aatagtatagcccactaacacatttgctatttggacatccgctgttaatatttataaca 106062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 106228 - 106176
Alignment:
Q  33 tagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| | || |||||||| |||||||||||    
T  106228 tagagcgtgctgataacgtgttatgaaaataaataaatagacatgataataat 106176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 31099448 - 31099712
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnn 102  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||                     
T  31099448 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaacagagatgataataatagagagaaggagaagaa 31099547  T
Q  103 nnnnnnntatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-------- 194  Q
           || |||||||||| |||||||||||  ||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||            
T  31099548 gagagaataagagcagtatttttattcactga--tgtatatatcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagccc 31099645  T
Q  195 ----------tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
              |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  31099646 aataacctagtagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 31099712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 27347175 - 27347252
Alignment:
Q  118 gtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27347175 gtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 27347252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 39493006 - 39492922
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||| |  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39493006 gaaatatattacatgaatacattttcagtgattagagcatgctgataacgtgttatgaatacaagtaaatagagatgataataat 39492922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7876341 - 7876267
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7876341 gaaatatattatattaatacattttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 7876267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 11660334 - 11660251
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  11660334 tatgagcagtattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 11660251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 28513062 - 28512988
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28513062 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 28512988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38985164 - 38985090
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38985164 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 38985090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 18540629 - 18540866
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnnnnnnnnntatgagcagtattcttattcac 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                        || |||||||||||||||||||    
T  18540629 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatagagagaaggagaagaagagaaaataggagcagtattcttattcac 18540728  T
Q  132 tgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtatggcccactaacat 213  Q
    |||  | ||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||                  ||||||||||||||||||     
T  18540729 tga--tctgtatatcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctagtagtatggcccactaacac 18540826  T
Q  214 atttgctatttggacatccaccgttaatatttataacaat 253  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  18540827 atttgctatttggacatccactattaatatttataacaat 18540866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 18534984 - 18535138
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    ||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||||||| || |||||||||||| ||||||                      
T  18534984 gagcagtattcttattcactgatctgtatatc--aatgttacaaatgagctctatttataggaaaatagagtagcttatgaactaagcccaataacctag 18535081  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  18535082 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 18535138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 31092952 - 31093106
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||| |||||||||||||| | ||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  31092952 gagcagtatttttattcactgatgtatatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctag 31093049  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  31093050 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 31093106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 35625255 - 35625412
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||                      
T  35625255 gagcagtattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataatctag 35625354  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||    
T  35625355 tagtatggcccaataacacatttgctatttggacatccactattaatatttataacaa 35625412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 38736198 - 38736114
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||  | |||||||||||| ||||||    
T  38736198 tatgagcagtattattattcactgatgtatgtatctgaatgttacaaatgaactctatttataagaaaatagagtagcttatgaa 38736114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 37365157 - 37365235
Alignment:
Q  116 cagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||    
T  37365157 cagtattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaa 37365235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 11654174 - 11654094
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||||||||||||||||| |||||||| ||||  |||||||||||||| |||||||||| |||||||||| |||| |||||||    
T  11654174 gagcagtattcttattcattgatgtgtatatc--aatgttacaaatgaactctatttatagggaaatagaatagcttatgaat 11654094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 28519405 - 28519275
Alignment:
Q  138 gtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgct 220  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| |||||||    
T  28519405 gtgtgtctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgct 28519306  T
Q  221 atttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||   |||||||||||||||    
T  28519305 atttggacatccaatattaatatttataaca 28519275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 7876239 - 7876173
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagc 187  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||| ||||||    
T  7876239 tattcttattcactaatgtgt--atctcaatgttacaaatgagctctatttatagggaaatatagtagc 7876173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 28512940 - 28512884
Alignment:
Q  138 gtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  28512940 gtgtgtctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 28512884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 37356741 - 37356892
Alignment:
Q  118 gtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagta 199  Q
    ||||||||||||| | |||||||||||||||||||| |||||||||||||||||  | ||||| |||||| ||||||                  |||||    
T  37356741 gtattcttattcaataatgtgtgtatctcaatgttataaatgagctctatttataagaaaatatagtagcttatgaactaagcccaataacctagtagta 37356840  T
Q  200 tggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  37356841 tggcccaataacacatttgctatttggacatccactattaatatttataaca 37356892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 38985035 - 38984903
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgctatttgga 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| ||||||||||||||    
T  38985035 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgctatttgga 38984936  T
Q  228 catccaccgttaatatttataacaatttttgat 260  Q
    ||||||   ||||||||||||||| || |||||    
T  38984935 catccaatattaatatttataacatttattgat 38984903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 11654245 - 11654202
Alignment:
Q  42 ctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11654245 ctgataacgtgttatgaatacaagtaaatagagatgataataat 11654202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37365044 - 37365119
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| ||||||||||||  |||||||| | |||||||||||||||||||||||||||| | |||||||||||||    
T  37365044 gaaatagattatactaatagattttcagttggttagagcgtgctgataacgtgttatgaaaataagtaaatagaga 37365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 38991222 - 38991099
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatggcccactaacatatttgctatttgga 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||                 |||||||||||||||||| ||||||||||||||    
T  38991222 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaactaagcccaaaacctagtagtatggcccactaacacatttgctatttgga 38991123  T
Q  228 catccaccgttaatatttataaca 251  Q
    ||||||   |||||||||||||||    
T  38991122 catccaatattaatatttataaca 38991099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 27347270 - 27347329
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatt 254  Q
    ||||||||| || ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  27347270 tagtatggctcaataacacatttgctatttggacatccactattaatatttataacaatt 27347329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 38736097 - 38736038
Alignment:
Q  193 aatagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||||||    
T  38736097 aatagtatggcccaataacatattttctatttggacaaccactattaatatttataacaa 38736038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 11660233 - 11660177
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| ||||| || ||||||||||||  |||||||||||||||    
T  11660233 tagtatggcccactaacacatttgttacttggacatccactattaatatttataaca 11660177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 37365254 - 37365310
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  37365254 tagtatggtccaataacacatttgctatttggacatccactattaatatttataaca 37365310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 11660393 - 11660359
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  11660393 tgttatgaatacaagtaaatagagatgataataat 11660359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 27347108 - 27347142
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  27347108 tgttatgaatacaagtaaatagagatgataataat 27347142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 7876147 - 7876090
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||| ||||||||| ||||| ||||||||||| |||  ||||||||||||||||    
T  7876147 tagtatggtccactaacacatttgttatttggacattcactattaatatttataacaa 7876090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 39492796 - 39492739
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    ||||||||| ||  ||| ||||||||||||||||||||||  ||||||||||||||||    
T  39492796 tagtatggctcataaacctatttgctatttggacatccactattaatatttataacaa 39492739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 11654067 - 11654019
Alignment:
Q  204 ccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    ||||||||| |||||||||||||| ||||||  ||||||||||||||||    
T  11654067 ccactaacacatttgctatttggatatccactattaatatttataacaa 11654019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 18534924 - 18534956
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  18534924 ttatgaatacaagtaaatagagatgataataat 18534956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 31092889 - 31092924
Alignment:
Q  50 gtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||| |||||||||||||||    
T  31092889 gtgttatgaatacaagtaaacagagatgataataat 31092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 28512866 - 28512807
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    |||||||||||||||||| ||||||  ||||||||||||   ||||||||||||||| ||||    
T  28512866 tagtatggcccactaacacatttgc--tttggacatccaatattaatatttataacactttt 28512807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 39492897 - 39492823
Alignment:
Q  110 tatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtag 186  Q
    |||||||||||||||||||||||||  | | ||||||| | ||||||||||  | ||||||| | ||||||||||||    
T  39492897 tatgagcagtattcttattcactga--tatatatctcactcttacaaatgaattttatttatagagaaatagagtag 39492823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39494333 - 39494373
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtg 41  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  39494333 gaaatatattatatgaatatcttttcagtgattagagcgtg 39494373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 252
Target Start/End: Original strand, 30727495 - 30727760
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataatnnnnnnnnnnnnnnnnn 102  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                     
T  30727495 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagagatggtaataatagagagaatgagaagaa 30727594  T
Q  103 nnnnnnntatgagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-------- 194  Q
           || ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||| | || ||||| |||||| ||||||            
T  30727595 gagagaataggagcagtattcttattcactga--tgtgtatatcaatgttacaaatgagctctatttttaggaaaatatagtagcttatgaattaagccc 30727692  T
Q  195 ----------tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
              |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  30727693 aataacctagtagtatggcccactaacacatttgctatttggacatccactattaatatttataacaa 30727760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21241424 - 21241350
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  21241424 gaaatatattatattaataccttttcggtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 21241350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 30714220 - 30714300
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  30714220 gagcagtattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 30714300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 30721997 - 30722077
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  30721997 gagcagtattcttattcactgatgtgtatatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 30722077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 37204382 - 37204230
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatg 201  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||  |||||                 |||||||    
T  37204382 tattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaaaacctagtagtatg 37204285  T
Q  202 gcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    ||||||||||| ||||||||||||||||||||   ||||||||||||||| ||||    
T  37204284 gcccactaacacatttgctatttggacatccaatattaatatttataacactttt 37204230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 37209859 - 37209712
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatg 201  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||  |||||                 |||||||    
T  37209859 tattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaaaacctagtagtatg 37209762  T
Q  202 gcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  37209761 gcccactaacacatttgctatttggacatccaatattaatatttataaca 37209712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27682662 - 27682602
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaata 61  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27682662 gaaatatattatattaatacctttttagtgattagagcgtgctgataacgtgttatgaata 27682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 37204469 - 37204415
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37204469 cttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 37204415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 21241295 - 21241246
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21241295 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 21241246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 21247799 - 21247750
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  21247799 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 21247750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 27683509 - 27683566
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||    
T  27683509 tagtatggcccactaacacatttgctatttggacatccaatattaatatttataacaa 27683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 27679727 - 27679783
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  27679727 tagtatggcccactaacacatttgctatttggacatccaatattaatatttataaca 27679783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 30714318 - 30714374
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| | |||||||||||||||||||  |||||||||||||||    
T  30714318 tagtatggcccactaacacaattgctatttggacatccactattaatatttataaca 30714374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 30722095 - 30722151
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| | |||||||||||||||||||  |||||||||||||||    
T  30722095 tagtatggcccactaacacaattgctatttggacatccactattaatatttataaca 30722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 27679660 - 27679709
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  27679660 tcaatgttacaaattagctctatttatagggaaatagagtagcttatgaa 27679709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 27683442 - 27683491
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  27683442 tcaatgttacaaatgagctctatttatagggaaatagagtaacttatgaa 27683491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21241228 - 21241172
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||| ||||||||||||||||||||   |||||||||||||||    
T  21241228 tagtatggtccactaacacatttgctatttggacatccaatattaatatttataaca 21241172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 21247732 - 21247676
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||| ||||||||||||||||||||   |||||||||||||||    
T  21247732 tagtatggtccactaacacatttgctatttggacatccaatattaatatttataaca 21247676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 26197033 - 26197093
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaattt 255  Q
    |||||||||| |  ||| ||||||||||||||||||||||  |||||||||||||||||||    
T  26197033 tagtatggcctataaacctatttgctatttggacatccactattaatatttataacaattt 26197093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 24042881 - 24042938
Alignment:
Q  137 tgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||| | ||||||||| ||||||||||||||| | ||||||||||||| ||||||    
T  24042881 tgtgtattttaatgttacatatgagctctatttatagagaaatagagtagcttatgaa 24042938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 26196952 - 26196896
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||||  ||| ||||||||||||| ||||||||  |||||||||||||||    
T  26196952 tagtatggcccataaacctatttgctatttgaacatccactattaatatttataaca 26196896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 30714158 - 30714192
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  30714158 tgttatgaatacaagtaaatagagatggtaataat 30714192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 30721935 - 30721969
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||| |||||||    
T  30721935 tgttatgaatacaagtaaatagagatggtaataat 30721969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 27683350 - 27683387
Alignment:
Q  38 cgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  27683350 cgtgctgataacttgttatgaatataagtaaatagaga 27683387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 35264545 - 35264699
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aa 194  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||                  ||    
T  35264545 gagcagtattcttattcactgatgtg--tatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacctaa 35264642  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  35264643 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 35264699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 35270286 - 35270440
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatg------------------aa 194  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||                  ||    
T  35270286 gagcagtattcttattcactgatgtg--tatctcaatgttacaaatgagctctatttatagggaaatagagtagcctatgaattaagcccaataacctaa 35270383  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  35270384 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 35270440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 23053384 - 23053538
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  23053384 gagcagtattcttattcactaatgtgtgt--ctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctcaataacctag 23053481  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  23053482 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 23053538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 23058959 - 23059113
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  23058959 gagcagtattcttattcactaatgtgtgt--ctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctag 23059056  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  23059057 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 23059113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21177943 - 21178017
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  21177943 gaaatagattatactaataccttttcagtaattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 21178017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 16675711 - 16675564
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa---------------tagtatg 201  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||| |||||| ||||||               |||||||    
T  16675711 agtattcttattcacttatgtgt--atctcaatgttacaaatgagctctatttatagggaaatatagtagcttatgaattaagcccaacctagtagtatg 16675614  T
Q  202 gcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  16675613 gcccactaacacatttgctatttggacattcactattaatatttataaca 16675564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 21171196 - 21171272
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  21171196 agtattcttattcacttatgtg--tatctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 21171272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 23058859 - 23058924
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23058859 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 23058924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 25365403 - 25365478
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||| |||||||| |  |||||||||||||||||||||||||| || |||||||||||| ||||||    
T  25365403 tattcttattcactaatgtgtgttttacaatgttacaaatgagctctatttataggaaaatagagtagcttatgaa 25365478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 39653932 - 39654012
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||  ||||||| |||||| |||||||    
T  39653932 gagcagtattcttattcactgatgtgtatatc--aatgttataaatgagctctatttataaggaaatatagtagcttatgaat 39654012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 21178057 - 21178135
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaa--atagagtagcctatgaat 195  Q
    |||||||||||||||| |||||  ||||||||||||||||||||||||||||||| || ||  |||||||||| |||||||    
T  21178057 agtattcttattcacttatgtg--tatctcaatgttacaaatgagctctatttataggaaaatatagagtagcttatgaat 21178135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 35270205 - 35270258
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  35270205 ttagagcgtgctgataacgtgttatgaaaataagtaaatagacatgataataat 35270258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 21171290 - 21171346
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||| ||||||||||||||  |||||||||||||||    
T  21171290 tagtatggcccactaacacatttgccatttggacatccactattaatatttataaca 21171346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 21178153 - 21178214
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    |||||||||||||||||| |||||| ||||| ||||||||  ||||||||||||||| ||||    
T  21178153 tagtatggcccactaacacatttgccatttgaacatccactattaatatttataacactttt 21178214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 25365497 - 25365553
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||| ||||||||  |||||||||||||||    
T  25365497 tagtatggcccaataacacatttgctatttgaacatccactattaatatttataaca 25365553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 39654030 - 39654086
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||| ||||| |||||||||||||||  |||||||||||||||    
T  39654030 tagtatggtccactaacacatttgttatttggacatccactattaatatttataaca 39654086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 39653872 - 39653904
Alignment:
Q  53 ttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||    
T  39653872 ttatgaatacaagtaaatagagatgataataat 39653904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29120884 - 29120939
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgtta 55  Q
    |||||| ||||||||||||| |||| ||| |||||||||||||||||||| |||||    
T  29120884 gaaatagattatactaatacatttttagttgattagagcgtgctgataacatgtta 29120939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 19437542 - 19437696
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  19437542 gagcagtattcttattcactaatgtgtgt--ctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagcccaataacctag 19437639  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  19437640 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 19437696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 25454722 - 25454879
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||                      
T  25454722 gagcagtattcttattcaatgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaattaagctcaataacctag 25454819  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatt 254  Q
    |||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||    
T  25454820 tagtatggcccactaacacatttgctatttggacattcactattaatatttataacaatt 25454879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 43287396 - 43287477
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  43287396 gagcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 43287477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 43293141 - 43293222
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  43293141 gagcagtattcttattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 43293222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 24056628 - 24056708
Alignment:
Q  114 agcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  24056628 agcagtattcttattcactaatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 24056708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 25445068 - 25445144
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25445068 agtattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 25445144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 113 - 251
Target Start/End: Original strand, 19443117 - 19443271
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| || |||||||||||| ||||||                      
T  19443117 gagcagtattcttattcactaatgtgtgt--ctcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaattaagcccaataacctag 19443214  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  19443215 tagtatggcccactaacacatttgctatttggacatccactattaatatttataaca 19443271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 19443017 - 19443082
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  19443017 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 19443082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 24053297 - 24053447
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------tagtat 200  Q
    |||||||||||||| |||| ||||||||||| |||||||||||||||||||||  | |||||||||||| ||||||                  ||||||    
T  24053297 tattcttattcactaatgtatgtatctcaatattacaaatgagctctatttataagaaaatagagtagcttatgaactaagcccaataacctagtagtat 24053396  T
Q  201 ggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  24053397 ggcccaataacacatttgctatttggacatccactattaatatttataaca 24053447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 43293066 - 43293113
Alignment:
Q  38 cgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43293066 cgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 43293113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 25454645 - 25454698
Alignment:
Q  32 ttagagcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25454645 ttagggcgtgctgataacgtgttataaatacaagtaaatagagatgataataat 25454698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 25445162 - 25445218
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  25445162 tagtatggcccattaacacatttgctatttggacatccactattaatatttataaca 25445218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24056517 - 24056592
Alignment:
Q  1 gaaatatattatactaataccttttcagt-gattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||| ||||||||||||  |||| ||| | |||||||||||||||||||||||||||| | |||||||||||||    
T  24056517 gaaatagattatactaatagattttaagttggttagagcgtgctgataacgtgttatgaaaataagtaaatagaga 24056592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 43293241 - 43293302
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    |||||||||||| ||||| |||||||||||||||||||||  ||||| ||||||||| ||||    
T  43293241 tagtatggcccaataacacatttgctatttggacatccactattaatgtttataacattttt 43293302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 8872362 - 8872318
Alignment:
Q  147 aatgttacaaatgagctctatttatggggaaatagagtagcctat 191  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||    
T  8872362 aatgttacaaatgaactctatttatagggaaatatagtagcctat 8872318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 43287496 - 43287552
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||| ||  ||||| |||||||||    
T  43287496 tagtatggcccaataacacatttgctatttggacatctactattaatgtttataaca 43287552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 25445002 - 25445036
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||| ||||||||||||||||||||||||||||    
T  25445002 tgttataaatacaagtaaatagagatgataataat 25445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 43287334 - 43287368
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    ||||||||||||| |||||||||||||||||||||    
T  43287334 tgttatgaatacaggtaaatagagatgataataat 43287368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 31433082 - 31433045
Alignment:
Q  214 atttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||||||  |||||||||||||||    
T  31433082 atttgctatttggacatccactattaatatttataaca 31433045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 24056727 - 24056782
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||| | ||||| ||||||||| |||||||||||  |||||||||||||||    
T  24056727 tagtatggccaa-taacacatttgctatctggacatccactattaatatttataaca 24056782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 14179 - 14100
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  14179 gagcagtattcttattcactgatgtgtct--ctcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 14100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 14081 - 14025
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||    
T  14081 tagtatggctcactaacacatttgctatttggacatccactattaatatttataaca 14025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 14241 - 14207
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  14241 tgttatgaatacaagtaaatagagatgataataat 14207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 22822782 - 22822717
Alignment:
Q  10 tatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22822782 tatattaataccttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 22822717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 29176697 - 29176619
Alignment:
Q  114 agcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29176697 agcagtattcttattcactaatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 29176619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 29185676 - 29185598
Alignment:
Q  114 agcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  29185676 agcagtattcttattcactaatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 29185598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 8242803 - 8242731
Alignment:
Q  3 aatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  8242803 aatatattatatgaataccttttcagtgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 8242731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29176807 - 29176735
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaataga 73  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  29176807 gaaatatattatattaataccttttcggtgattagagcgtgctgataacgtgttatgaaaataagtaaataga 29176735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 22822684 - 22822537
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatg 201  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||  |||||                 |||||||    
T  22822684 tattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaaaacctagtagtatg 22822587  T
Q  202 gcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  22822586 gcccactaacacatttgctatttggacatccaatattaatatttataaca 22822537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 22826987 - 22826840
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa-----------------tagtatg 201  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||  |||||                 |||||||    
T  22826987 tattcttattcactgatgtgtgtatc--aatgttacaaatgagctctatttatagggaaatagagtagctaatgaactaagcccaaaacctagtagtatg 22826890  T
Q  202 gcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  22826889 gcccactaacacatttgctatttggacatccaatattaatatttataaca 22826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 340302 - 340377
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  340302 tattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 340377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 346536 - 346611
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  346536 tattcctattcactgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 346611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 22827074 - 22827020
Alignment:
Q  21 cttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22827074 cttttcagtgattagagcgtgctgataacgtgttatgaatataagtaaatagaga 22827020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 8242671 - 8242615
Alignment:
Q  139 tgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  8242671 tgtaactcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaat 8242615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 8248163 - 8248110
Alignment:
Q  198 tatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  8248163 tatggcccactaacacatttgctatttggacatccactattaatatttataaca 8248110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 8248240 - 8248184
Alignment:
Q  139 tgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaat 195  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  8248240 tgtaactcaatgttacaaatgagctctatttataggaaaatagagtagcttatgaat 8248184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 346455 - 346501
Alignment:
Q  29 tgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  346455 tgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 346501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 29176600 - 29176542
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaat 253  Q
    ||||||| |||||||||| ||||||||||||||||||||   |||||||||||||||||    
T  29176600 tagtatgacccactaacacatttgctatttggacatccaatattaatatttataacaat 29176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 346630 - 346691
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    ||||||||| || ||||| ||||||||||||||||||| |  ||||||||||||||||||||    
T  346630 tagtatggctcaataacacatttgctatttggacatccgctattaatatttataacaatttt 346691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 8242594 - 8242541
Alignment:
Q  198 tatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||| |||||||||| |||||||||||||||||||||  |||||||||||||||    
T  8242594 tatgacccactaacacatttgctatttggacatccactattaatatttataaca 8242541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 25830398 - 25830459
Alignment:
Q  117 agtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaata 180  Q
    |||||||||||||||||  ||||||  ||||||| |||||| ||||||||||||| ||||||||    
T  25830398 agtattcttattcactg--gtgtgtccctcaatgctacaaaggagctctatttatagggaaata 25830459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 2068845 - 2068888
Alignment:
Q  214 atttgctatttggacatccaccgttaatatttataacaattttt 257  Q
    |||||||||||||||||||||  ||||||||||||||| |||||    
T  2068845 atttgctatttggacatccactattaatatttataacagttttt 2068888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 29185579 - 29185541
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatcca 233  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29185579 tagtatggcccactaacacattttctatttggacatcca 29185541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 25830510 - 25830547
Alignment:
Q  214 atttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||||||||||||  |||||||||||||||    
T  25830510 atttgctatttggacatccactattaatatttataaca 25830547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 340396 - 340452
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    ||||||||| || ||||| ||||| ||||||||||||| |  |||||||||||||||    
T  340396 tagtatggctcaataacacatttgttatttggacatccgctattaatatttataaca 340452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23421888 - 23421816
Alignment:
Q  1 gaaatatattatactaataccttttcagtgattagagcgtgctgataacgtgttatgaatacaagtaaataga 73  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23421888 gaaatatattatattaatacttttttagtgattagagcgtgctgataacgtgttatgaatataagtaaataga 23421816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 18738727 - 18738568
Alignment:
Q  113 gagcagtattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa------------------ 194  Q
    |||||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||| || |||||||||||| ||||||                      
T  18738727 gagcagtattcttatttactgacgtgtct--ctcaatgttacaaatgagctctatttataggtaaatagagtagcttatgaactaagcccaataacctag 18738630  T
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaatttt 256  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  18738629 tagtatggcccactaacacatttgctatttggacatccactattaatatttataacaatttt 18738568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 33660902 - 33660977
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||  | |||||||||||| ||||||    
T  33660902 tattcttattcaccgatgtgtgtatctcaatgttacaaatgaactctatttataagaaaatagagtagcttatgaa 33660977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 23427605 - 23427556
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23427605 tcaatgttacaaatgagctctatttatagggaaatagagtagcttatgaa 23427556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 23421759 - 23421710
Alignment:
Q  145 tcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  23421759 tcaatgttacaaatgagctctatttatagggaaatagagtaacttatgaa 23421710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 33660999 - 33661054
Alignment:
Q  198 tatggcccactaacatatttgctatttggacatccaccgttaatatttataacaat 253  Q
    |||||||||  ||| ||||||||||||||||||||||  |||||||||||||||||    
T  33660999 tatggcccataaacctatttgctatttggacatccactattaatatttataacaat 33661054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 18738789 - 18738755
Alignment:
Q  51 tgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||||||||||||||||||||||||    
T  18738789 tgttatgaatacaagtaaatagagatgataataat 18738755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 23427538 - 23427482
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||| ||||||||| |||||||||||||||||| |   |||||||||||||||    
T  23427538 tagtatggtccactaacacatttgctatttggacatcaaatattaatatttataaca 23427482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 23421692 - 23421635
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataacaa 252  Q
    |||||| | ||||||||| |||||||||||||||||| |   ||||||||||||||||    
T  23421692 tagtatagtccactaacacatttgctatttggacatcaaatattaatatttataacaa 23421635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 9472 - 9398
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  9472 tattcttattca-tgatgtgtgtatcccaatgttacaaatgagctctatttataagaaaatagagtagcttatgaa 9398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 9555 - 9509
Alignment:
Q  29 tgattagagcgtgctgataacgtgttatgaatacaagtaaatagaga 75  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||    
T  9555 tgattagagcgtgctgataacgtgttatgaaaataagtaaatagaga 9509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 9379 - 9323
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||| | |||||||||||||||||||||  |||||||||||||||    
T  9379 tagtatggcccaataatacatttgctatttggacatccactattaatatttataaca 9323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 58089 - 58014
Alignment:
Q  119 tattcttattcactgatgtgtgtatctcaatgttacaaatgagctctatttatggggaaatagagtagcctatgaa 194  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||  | ||||| |||||| ||||||    
T  58089 tattcttattcaataatgtgtgtatctcaatgttacaaatgagctctatttataagaaaatatagtagcttatgaa 58014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 57995 - 57939
Alignment:
Q  195 tagtatggcccactaacatatttgctatttggacatccaccgttaatatttataaca 251  Q
    |||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||    
T  57995 tagtatggcccaataacacatttgctatttggacatccactattaatatttataaca 57939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 6206 - 6255
Alignment:
Q  36 agcgtgctgataacgtgttatgaatacaagtaaatagagatgataataat 85  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6206 agcgtgctgataacatgttatgaatacaagtaaatagagatgataataat 6255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 6399 - 6435
Alignment:
Q  213 tatttgctatttggacatccaccgttaatatttataa 249  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6399 tatttgctatttggacatccactgttaatatttataa 6435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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