View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_11 (Length: 491)
Name: NF4014_low_11
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 26454753 - 26455220
Alignment:
| Q |
11 |
catcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggcca |
110 |
Q |
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| T |
26454753 |
catcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtggccgggattttggttgacaaatggcca |
26454852 |
T |
|
| Q |
111 |
atttgtatctcattcttgatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454853 |
atttgtatctcattcttgatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaagattgttttgtgtggatttcatgaact |
26454952 |
T |
|
| Q |
211 |
tgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagttgttgcaccacttcatattatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454953 |
tgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttagaaagttgttgcaccacttcatattatg |
26455052 |
T |
|
| Q |
311 |
atgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctcagttgtatcttcaacaatgcctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455053 |
atgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggcttcctcagttgtatcttcaacaatgcctt |
26455152 |
T |
|
| Q |
411 |
ccttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcct |
478 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455153 |
acttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcct |
26455220 |
T |
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