View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_14 (Length: 447)

Name: NF4014_low_14
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_14
NF4014_low_14
[»] chr6 (3 HSPs)
chr6 (68-214)||(7365083-7365230)
chr6 (81-210)||(29063517-29063657)
chr6 (81-210)||(29118371-29118511)
[»] chr3 (4 HSPs)
chr3 (68-209)||(14567802-14567944)
chr3 (68-214)||(30813328-30813475)
chr3 (82-183)||(39439903-39440005)
chr3 (82-158)||(25909351-25909428)
[»] chr8 (5 HSPs)
chr8 (68-214)||(11354711-11354868)
chr8 (69-183)||(24944974-24945089)
chr8 (121-209)||(36274288-36274376)
chr8 (85-183)||(42025396-42025495)
chr8 (84-185)||(29844220-29844322)
[»] chr4 (5 HSPs)
chr4 (68-210)||(26861388-26861541)
chr4 (86-183)||(3121212-3121310)
chr4 (114-214)||(29011463-29011558)
chr4 (82-183)||(35292029-35292131)
chr4 (409-439)||(31403857-31403887)
[»] chr1 (8 HSPs)
chr1 (68-210)||(42117179-42117332)
chr1 (68-209)||(49741263-49741415)
chr1 (90-183)||(16302758-16302852)
chr1 (114-184)||(24020591-24020661)
chr1 (85-210)||(49764854-49764980)
chr1 (84-164)||(50139607-50139688)
chr1 (114-174)||(38761093-38761153)
chr1 (174-206)||(41404019-41404051)
[»] chr7 (4 HSPs)
chr7 (233-345)||(7219491-7219603)
chr7 (121-206)||(33446947-33447032)
chr7 (387-439)||(7219647-7219699)
chr7 (85-212)||(23417262-23417390)
[»] chr5 (3 HSPs)
chr5 (68-209)||(32232951-32233103)
chr5 (82-183)||(11617218-11617320)
chr5 (174-210)||(32025875-32025911)
[»] scaffold0022 (2 HSPs)
scaffold0022 (82-183)||(44162-44264)
scaffold0022 (82-183)||(77883-77985)
[»] chr2 (1 HSPs)
chr2 (82-183)||(10354239-10354341)
[»] scaffold0127 (1 HSPs)
scaffold0127 (174-206)||(30284-30316)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 7365083 - 7365230
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7365083 aaaaattgaaggtttgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattat 7365182  T
Q  167 gtaccactccattccatcacatatcaccaatccaaacatagcctaaga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7365183 gtaccactccattccatcacatatcaccaatccaaacatagcctaaga 7365230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 29063657 - 29063517
Alignment:
Q  81 ttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccatt 179  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  29063657 ttggctggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgcaccactccatt 29063558  T
Q  180 ----------ccatcacatatcaccaatccaaacatagcct 210  Q
              |||||||||||||||||||||||||||||||    
T  29063557 ccattccattccatcacatatcaccaatccaaacatagcct 29063517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 29118511 - 29118371
Alignment:
Q  81 ttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccatt 179  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  29118511 ttggctggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattatgcaccactccatt 29118412  T
Q  180 ----------ccatcacatatcaccaatccaaacatagcct 210  Q
              |||||||||||||||||||||||||||||||    
T  29118411 ccattccattccatcacatatcaccaatccaaacatagcct 29118371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 14567944 - 14567802
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  14567944 aaaaattgaaggtttggatggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaatataattat 14567845  T
Q  167 gtaccactccattccatcacatatcaccaatccaaacatagcc 209  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  14567844 gtaccactccattccatcacataccaccaatccaaacatagcc 14567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 30813328 - 30813475
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| | ||||| |||||| |||||||||||||| |||||    
T  30813328 aaaaattgaaggtttcggtggtattggatgaaatgagatccattgtattccatcccactccattaattttttacaaatctaaacaatggaatataattat 30813427  T
Q  167 gtaccactccattccatcacatatcaccaatccaaacatagcctaaga 214  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  30813428 gtaccactccattccatcacatatcaccaatccaaacataacctaaga 30813475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 39439903 - 39440005
Alignment:
Q  82 tgggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||||||||||| |||||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||| || | | |||||||||||    
T  39439903 tgggtggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattc 39440002  T
Q  181 cat 183  Q
    |||    
T  39440003 cat 39440005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 25909428 - 25909351
Alignment:
Q  82 tgggtggtattggatggaatgagatcca-tgtattccatcccactccattcactttttgcaaatccaaacaatggaat 158  Q
    ||||||||||||||||||||||| |||| | |||| |||  || ||||||||||| || |||| ||||||||||||||    
T  25909428 tgggtggtattggatggaatgagttccattatatttcatttcattccattcacttattacaaaaccaaacaatggaat 25909351  T

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Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 11354868 - 11354711
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11354868 aaaaattgaaggtttgggtggtattggatggaatcagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattat 11354769  T
Q  167 gtaccactcca----------ttccatcacatatcaccaatccaaacatagcctaaga 214  Q
    |||||||||||          |||||||||||||||||||||||||||||||||||||    
T  11354768 gtaccactccattccgttccattccatcacatatcaccaatccaaacatagcctaaga 11354711  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 24945089 - 24944974
Alignment:
Q  69 aaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatg 167  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||    
T  24945089 aaaattgaaggttttggtggtattggatggaatgagttccattgtattccattccactcgagtcactttttgcaaatccaaacaatggaatataattatg 24944990  T
Q  168 taccactccattccat 183  Q
    ||||||||||||||||    
T  24944989 taccactccattccat 24944974  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 36274288 - 36274376
Alignment:
Q  121 ccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccatcacatatcaccaatccaaacatagcc 209  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36274288 ccactccattcactttttgcaaatccaaacaatgaaatataattatataccactccattccatcacatatcaccaatccaaacatagcc 36274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 42025396 - 42025495
Alignment:
Q  85 gtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccat 183  Q
    |||||||||||||||||| | |||||   | ||||| | | |||||||| ||||| |||| |||||||||||||||||  ||| | ||||||||||||||    
T  42025396 gtggtattggatggaatgggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaatatggatatatcccactccattccat 42025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 29844322 - 29844220
Alignment:
Q  84 ggtggtattggatggaatgagatccatg-tattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattcca 182  Q
    |||||||| ||||||||||   |||||  ||||||||  ||||||||| |  |||| |||||||||||||||||||||||||   |  ||||||||||||    
T  29844322 ggtggtataggatggaatggattccatcatattccatttcactccattaaaattttacaaatccaaacaatggaatatgattccatctcactccattcca 29844223  T
Q  183 tca 185  Q
    |||    
T  29844222 tca 29844220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 26861388 - 26861541
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26861388 aaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattat 26861487  T
Q  167 gtaccac----------tccattccatcacatatcaccaatccaaacatagcct 210  Q
    |||||||          |||||||||||||||||||||||||||||||||||||    
T  26861488 gtaccactccattccgttccattccatcacatatcaccaatccaaacatagcct 26861541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 3121310 - 3121212
Alignment:
Q  86 tggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccat 183  Q
    ||||||||||||||||||| |||||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||| || | | ||||||||||||||    
T  3121310 tggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatggttttatcccactccattccat 3121212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 29011558 - 29011463
Alignment:
Q  114 ttccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccatcacatatcaccaatccaaacatagcctaag 213  Q
    |||||||||| |||||||| |||||  |||| ||||||||||||||| |||     ||| ||||||||||| || | ||| |||||||||||||||||||    
T  29011558 ttccatcccattccattcatttttttaaaattcaaacaatggaatatcatt-----ccattccattccatctcaaaccactaatccaaacatagcctaag 29011464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 35292131 - 35292029
Alignment:
Q  82 tgggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||| ||||||| | |||   | ||||| ||| |||||||  |||||||||| ||||||||||||||||| || | | |||||||||||    
T  35292131 tgggtggtattggattgaatgagttacatcacactccattccattccattccttttttgcaaaaccaaacaatggaatatggttttatcccactccattc 35292032  T
Q  181 cat 183  Q
    |||    
T  35292031 cat 35292029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 439
Target Start/End: Complemental strand, 31403887 - 31403857
Alignment:
Q  409 ttcatcttcacacctcaacaagcttcatctc 439  Q
    |||||||||||||||||||||||||||||||    
T  31403887 ttcatcttcacacctcaacaagcttcatctc 31403857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 42117179 - 42117332
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42117179 aaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatataattat 42117278  T
Q  167 gtaccac----------tccattccatcacatatcaccaatccaaacatagcct 210  Q
    |||||||          |||||||||||||||||||||||||||||||||||||    
T  42117279 gtaccactccattccgttccattccatcacatatcaccaatccaaacatagcct 42117332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 49741415 - 49741263
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  49741415 aaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattcgctttttgcaaatccaaacaatggaatataattat 49741316  T
Q  167 gtaccactcca----------ttccatcacatatcaccaatccaaacatagcc 209  Q
    |||||||||||          ||||||||||||||||||||||||||||||||    
T  49741315 gtaccactccattccgttccattccatcacatatcaccaatccaaacatagcc 49741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 16302758 - 16302852
Alignment:
Q  90 attggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccat 183  Q
    ||||||||||||||| |||||   | ||||| ||| |||||||  ||||| |||| ||||||||||||||||| || | | ||||||||||||||    
T  16302758 attggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaacaatggaatatggttttatcccactccattccat 16302852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 24020591 - 24020661
Alignment:
Q  114 ttccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccatc 184  Q
    |||||| ||| |||| |||| |||||||||||||||||||||||   |||||| ||||| |||||| ||||    
T  24020591 ttccattccattccactcacattttgcaaatccaaacaatggaactcgattatttaccattccattacatc 24020661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 49764980 - 49764854
Alignment:
Q  85 gtggtattggatggaatgagatccatg-tattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccat 183  Q
    ||||||||||||| |||||| |||||  || ||||| |||  | ||||| ||||||||||  |||||||||||| ||| || | | |||||||| |||||    
T  49764980 gtggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaacatggttttatcccactccactccat 49764881  T
Q  184 cacatatcaccaatccaaacatagcct 210  Q
      |||  || |||||||||||||||||    
T  49764880 tccattccatcaatccaaacatagcct 49764854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 50139607 - 50139688
Alignment:
Q  84 ggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgatt 164  Q
    |||||||| ||||||||||   ||||| | ||||||| |||||||||| |  |||| ||||||||||||| |||||||||||    
T  50139607 ggtggtataggatggaatggattccatcttattccattccactccattaaaattttacaaatccaaacaacggaatatgatt 50139688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 38761093 - 38761153
Alignment:
Q  114 ttccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccact 174  Q
    |||||| |||||||||||| ||||  |||||||||||||| |||||| ||||  |||||||    
T  38761093 ttccattccactccattcatttttaacaaatccaaacaatagaatataattaattaccact 38761153  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 41404051 - 41404019
Alignment:
Q  174 tccattccatcacatatcaccaatccaaacata 206  Q
    |||||||||||||||| ||||||||||||||||    
T  41404051 tccattccatcacataccaccaatccaaacata 41404019  T

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Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 233 - 345
Target Start/End: Original strand, 7219491 - 7219603
Alignment:
Q  233 gttgacaaaccctgatatttacaatccagcccactatgggccggttcggaccgggttaagcaaccagcccatttcgacaaatcttccaaaatcactcata 332  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  7219491 gttgacaaaccctgatatttacaacccagcccactatgggccggttcggaccgggttaagcacccggcccatttcgacaaatcttccaaaatcactcata 7219590  T
Q  333 ttccgttcctcag 345  Q
    |||||||||||||    
T  7219591 ttccgttcctcag 7219603  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 33447032 - 33446947
Alignment:
Q  121 ccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccatcacatatcaccaatccaaacata 206  Q
    ||||||||||||||||||||   |||||||||||||| || ||||  |||||||||||||||||||||| || |||||||||||||    
T  33447032 ccactccattcactttttgctggtccaaacaatggaacataattagttaccactccattccatcacataccatcaatccaaacata 33446947  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 7219647 - 7219699
Alignment:
Q  387 accaatacaagttcgattccccttcatcttcacacctcaacaagcttcatctc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7219647 accaatacaagttcgattccccttcatcttcacacctcaacaaacttcatctc 7219699  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 23417262 - 23417390
Alignment:
Q  85 gtggtattggatggaatgagatccatg-tattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattccat 183  Q
    |||||||||||||||||| | |||||  || ||||| ||| |||||||  ||||| |||| ||||||||||||| ||| ||   | ||||||||||||||    
T  23417262 gtggtattggatggaatgggttccatcatactccatgccattccattccttttttacaaaaccaaacaatggaacatggttccatcccactccattccat 23417361  T
Q  184 cacatatcaccaatccaaacatagcctaa 212  Q
    |||    || |||||||||||||||||||    
T  23417362 cactctccatcaatccaaacatagcctaa 23417390  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 32233103 - 32232951
Alignment:
Q  68 aaaaattgaaggtttgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattat 166  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  32233103 aaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccattccactccattcactttttgcaaatccaaacaatggaatataattat 32233004  T
Q  167 gtaccac----------tccattccatcacatatcaccaatccaaacatagcc 209  Q
    |||||||          ||||||||||||||||||||||||||||||||||||    
T  32233003 gtaccactctattccgttccattccatcacatatcaccaatccaaacatagcc 32232951  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 11617320 - 11617218
Alignment:
Q  82 tgggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||||||||||| |||||   | ||||| ||| |||||||| |||||||||| ||||||||||||||||| || | | |||||||||||    
T  11617320 tgggtggtattggatggaatgagttccatcacactccattccattccattcattttttgcaaaaccaaacaatggaatatggttttatcccactccattc 11617221  T
Q  181 cat 183  Q
    |||    
T  11617220 cat 11617218  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 32025911 - 32025875
Alignment:
Q  174 tccattccatcacatatcaccaatccaaacatagcct 210  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  32025911 tccattccatcacatatcatcaatccaaacttagcct 32025875  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 44162 - 44264
Alignment:
Q  82 tgggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| |||||||||||||||||  | | | |||||||||||    
T  44162 tgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattc 44261  T
Q  181 cat 183  Q
    |||    
T  44262 cat 44264  T

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Target: scaffold0022; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 77883 - 77985
Alignment:
Q  82 tgggtggtattggatggaatgagatccatgt-attccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| |||||||||||||||||  | | | |||||||||||    
T  77883 tgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatggatctatcccactccattc 77982  T
Q  181 cat 183  Q
    |||    
T  77983 cat 77985  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 10354341 - 10354239
Alignment:
Q  82 tgggtggtattggatggaatgagatccat-gtattccatcccactccattcactttttgcaaatccaaacaatggaatatgattatgtaccactccattc 180  Q
    ||||||||||||||||||||||| | ||| | | ||||| ||| |||||||  ||||||||||  |||||||| ||||||| || | | | |||||||||    
T  10354341 tgggtggtattggatggaatgagtttcatcgcactccattccattccattccttttttgcaaaatcaaacaatagaatatggttttatcctactccattc 10354242  T
Q  181 cat 183  Q
    |||    
T  10354241 cat 10354239  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 30284 - 30316
Alignment:
Q  174 tccattccatcacatatcaccaatccaaacata 206  Q
    |||||||||||||||| ||||||||||||||||    
T  30284 tccattccatcacataccaccaatccaaacata 30316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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