View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4014_low_2 (Length: 599)
Name: NF4014_low_2
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_2 |
 |  |
|
| [»] scaffold0536 (3 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 48912694 - 48912107
Alignment:
| Q |
1 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912694 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt |
48912595 |
T |
 |
| Q |
101 |
gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48912594 |
gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcatt |
48912495 |
T |
 |
| Q |
201 |
ggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912494 |
ggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccc |
48912395 |
T |
 |
| Q |
301 |
aacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48912394 |
aacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtccg |
48912295 |
T |
 |
| Q |
401 |
tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttcca |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48912294 |
tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttcca |
48912195 |
T |
 |
| Q |
501 |
aagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912194 |
aagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct |
48912107 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 48957974 - 48958550
Alignment:
| Q |
1 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||||| |||| || ||| |||| | | || | ||||| | | ||| ||| ||| || |
|
|
| T |
48957974 |
tgatttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttac |
48958073 |
T |
 |
| Q |
101 |
gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcatt |
200 |
Q |
| |
|
| ||| || |||||||| |||||||||||||| || |||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
48958074 |
acaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcatt |
48958173 |
T |
 |
| Q |
201 |
ggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccc |
300 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||| |
|
|
| T |
48958174 |
ggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccc |
48958273 |
T |
 |
| Q |
301 |
aacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccg |
400 |
Q |
| |
|
| ||| |||| |||| | | ||||||||||| || |||||||||| || || || |||||||| ||| |||||||||||||| | || | || ||| |
|
|
| T |
48958274 |
accccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccc |
48958373 |
T |
 |
| Q |
401 |
tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttcca |
500 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||| || |||| |||| ||||||| |
|
|
| T |
48958374 |
tttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttcca |
48958473 |
T |
 |
| Q |
501 |
aagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc |
577 |
Q |
| |
|
||||||||||||| ||| ||||||| | ||| |||| |||||||||| ||| | |||||||| |||||| |||| |
|
|
| T |
48958474 |
aagcatatgtacaacactgagttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctc |
48958550 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 3 - 588
Target Start/End: Original strand, 48965161 - 48965743
Alignment:
| Q |
3 |
attttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| ||||||| || |||| || | |||| |||||||||||| ||| |||||| | |
|
|
| T |
48965161 |
attttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaac |
48965260 |
T |
 |
| Q |
103 |
tccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattgg |
202 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||| |||| | |||||||| || || ||||| |||||||||||||| ||||| || ||||| || |
|
|
| T |
48965261 |
accattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcgg |
48965360 |
T |
 |
| Q |
203 |
aacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaa |
302 |
Q |
| |
|
|||||| |||| ||| ||||| || ||||| ||||| |||||||| |||||||| |||||||| || | |||||||||||||| |||||| ||||||||| |
|
|
| T |
48965361 |
aacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaa |
48965460 |
T |
 |
| Q |
303 |
cccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtt |
402 |
Q |
| |
|
||| ||||||||| | | ||||||||| || |||||||||| || |||||||| ||||| |||| |||||||||||| | |||| ||| ||| | |
|
|
| T |
48965461 |
cccctaataatcaaacc---cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgt |
48965557 |
T |
 |
| Q |
403 |
tcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaa |
502 |
Q |
| |
|
| || |||| ||||||||| || || |||| ||||||||| || | ||||||||||||||||| ||||||||| | || |||| |||||||||| |
|
|
| T |
48965558 |
tattaaggggaataacccatataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaa |
48965657 |
T |
 |
| Q |
503 |
gcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct |
588 |
Q |
| |
|
|| |||||||| ||| ||||||| | | || || || ||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |
|
|
| T |
48965658 |
gcttatgtacaacactgagttatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctct |
48965743 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 147 - 445
Target Start/End: Original strand, 48961267 - 48961567
Alignment:
| Q |
147 |
gttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaa--ttccacccaca |
244 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | ||||| || |||||||| | |||||||||| | ||||||| ||||| |||||||| || |
|
|
| T |
48961267 |
gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca |
48961366 |
T |
 |
| Q |
245 |
atgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctct |
344 |
Q |
| |
|
||| |||||||| ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | || |||||||| |
|
|
| T |
48961367 |
atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct |
48961466 |
T |
 |
| Q |
345 |
tcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcgatgctt |
444 |
Q |
| |
|
||||| || || |||||||| || |||||||||||||| | |||| | | ||| ||| || |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
48961467 |
tcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttcccttttttctcaggaacaacccatacaaattcgtgacccgatgctt |
48961566 |
T |
 |
| Q |
445 |
c |
445 |
Q |
| |
|
| |
|
|
| T |
48961567 |
c |
48961567 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 48974062 - 48974209
Alignment:
| Q |
115 |
caccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcact |
214 |
Q |
| |
|
|||| |||||||| ||||| || ||||||| |||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48974062 |
caccaacctccacaccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcact |
48974161 |
T |
 |
| Q |
215 |
aactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc |
262 |
Q |
| |
|
||| || || || ||||| |||||||| |||||||||| |||||||| |
|
|
| T |
48974162 |
aacggcttccacggtggagttccacccgcaatgtgtcaagaatgcacc |
48974209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 48951185 - 48951288
Alignment:
| Q |
113 |
tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca |
212 |
Q |
| |
|
|||||| || ||||| || |||||| |||| || ||||| | |||||||||||| || || || | ||||| ||||||||||||||| ||||||||| || |
|
|
| T |
48951185 |
tgcacctacttccactcctatcccacgcacatgagttatgagcttctcattgtagaactgatcactatgcaccggccacgtgatcatcggaacccctaca |
48951284 |
T |
 |
| Q |
213 |
ctaa |
216 |
Q |
| |
|
|||| |
|
|
| T |
48951285 |
ctaa |
48951288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 466
Target Start/End: Original strand, 48951399 - 48951526
Alignment:
| Q |
339 |
ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg |
438 |
Q |
| |
|
|||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| ||| |||||||| || ||||||||||||||||| | || | |
|
|
| T |
48951399 |
ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg |
48951498 |
T |
 |
| Q |
439 |
atgcttcaatcccgcacgcaatctcata |
466 |
Q |
| |
|
|| |||| ||| ||| ||||||||||| |
|
|
| T |
48951499 |
attcttctatcgcgcttgcaatctcata |
48951526 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 33396687 - 33396779
Alignment:
| Q |
160 |
cattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtca |
252 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||| || | |||||| | ||||||||| ||| | || | || |||||||| ||||||||||||| |
|
|
| T |
33396687 |
cattgtaaaattgttcaccatacattggccatgtcaccattggtaaccctgcactcactccttccaatgttgaattccatccacaatgtgtca |
33396779 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 6860 - 6287
Alignment:
| Q |
1 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| | ||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
6860 |
tgattttctcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttga |
6761 |
T |
 |
| Q |
101 |
gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcatt |
200 |
Q |
| |
|
||||| || | ||| || ||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6760 |
actccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatc |
6661 |
T |
 |
| Q |
201 |
ggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccc |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| ||||||||| |||||||||| |
|
|
| T |
6660 |
ggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagccc |
6561 |
T |
 |
| Q |
301 |
aacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccg |
400 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | |||| || ||| |
|
|
| T |
6560 |
aacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccc |
6461 |
T |
 |
| Q |
401 |
tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttcca |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| |||||||||||||||| ||| | ||| ||||||| |
|
|
| T |
6460 |
tttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttcca |
6361 |
T |
 |
| Q |
501 |
aagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacact |
574 |
Q |
| |
|
||||||||||||| ||| ||||||||| | ||||||| |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
6360 |
aagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacact |
6287 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 10842 - 10257
Alignment:
| Q |
1 |
tgattttctcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgt |
100 |
Q |
| |
|
||||| |||||||| ||| || | |||||||||||| ||||||||||||||||||| |||||||| |||| ||||||| | |||||||||||| | |
|
|
| T |
10842 |
tgattatctcagctacataactattgtccatcaatctcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaa |
10743 |
T |
 |
| Q |
101 |
gctccattccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcatt |
200 |
Q |
| |
|
|| ||| || |||||| || ||| |||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10742 |
gcaccactctactgcacccacttcccccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcatt |
10643 |
T |
 |
| Q |
201 |
ggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagccc |
300 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||||||| || |||| |
|
|
| T |
10642 |
ggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggccc |
10543 |
T |
 |
| Q |
301 |
aacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccg |
400 |
Q |
| |
|
||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | | |||| ||| ||| |
|
|
| T |
10542 |
aacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactctcattctctttccc |
10443 |
T |
 |
| Q |
401 |
tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttcca |
500 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||| || ||||||||| | || ||||||||||||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
10442 |
tttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttcca |
10343 |
T |
 |
| Q |
501 |
aagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctct |
588 |
Q |
| |
|
||||| ||||||| ||| || ||||| | ||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
10342 |
aagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctct |
10257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 1690 - 1541
Alignment:
| Q |
113 |
tgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctgca |
212 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| | || || || ||||| || | ||| | ||||| ||||||||||||| |||||| |
|
|
| T |
1690 |
tgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgca |
1591 |
T |
 |
| Q |
213 |
ctaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacc |
262 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||| ||||||||| |
|
|
| T |
1590 |
ctaacagcctcggttatagagttccacccacaatgtgtcaaaaatgcacc |
1541 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 111 - 577
Target Start/End: Complemental strand, 12590411 - 12589942
Alignment:
| Q |
111 |
gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg |
210 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| | ||||||||||||||||||||||| ||||| |||| || ||||| |||||||| |||| || | |
|
|
| T |
12590411 |
gttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccag |
12590312 |
T |
 |
| Q |
211 |
cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat |
310 |
Q |
| |
|
||||||| ||||| || ||||||||| ||||||||||||||||| || ||||| || ||||||||| |||||| || ||||| ||||||||| |||| |
|
|
| T |
12590311 |
cactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaat |
12590212 |
T |
 |
| Q |
311 |
aatcatagccttcttctttc---cgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttt |
407 |
Q |
| |
|
|||| | |||||||||||| | || ||||||||||||| || | ||||||||||||| ||| ||||| ||| | |||| ||| ||| ||| || |
|
|
| T |
12590211 |
gatcaaacccttcttctttctcccaatgtttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttc |
12590112 |
T |
 |
| Q |
408 |
tcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcata |
507 |
Q |
| |
|
|| |||| |||||||| ||||||||| | |||||||| || || |||| ||||||||||||||||||||| || |||| ||| ||| |||||||||| |
|
|
| T |
12590111 |
tcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcata |
12590012 |
T |
 |
| Q |
508 |
tgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc |
577 |
Q |
| |
|
|||||| ||| ||||||||| | |||||||| |||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
12590011 |
tgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctc |
12589942 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 111 - 577
Target Start/End: Complemental strand, 12483706 - 12483237
Alignment:
| Q |
111 |
gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg |
210 |
Q |
| |
|
||||||||||| ||||| |||||||| |||| | ||||| | |||||||||||||| ||||| || || | |||||||||||||||||||| ||||| |
|
|
| T |
12483706 |
gttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctg |
12483607 |
T |
 |
| Q |
211 |
cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat |
310 |
Q |
| |
|
||||||| || || ||| |||||||| ||||| || ||||||||||||||||| || | |||||||| ||||| |||||||| ||||| ||| | || |
|
|
| T |
12483606 |
cactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgat |
12483507 |
T |
 |
| Q |
311 |
aatcatagccttcttctttccgataat---tctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttt |
407 |
Q |
| |
|
|| | | || |||| || | |||| |||||| ||||| ||||| |||||||| |||||||||||||| || | |||| ||| ||| ||| || |
|
|
| T |
12483506 |
gattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttc |
12483407 |
T |
 |
| Q |
408 |
tcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcata |
507 |
Q |
| |
|
|||||||||||||||||||||| | || ||||||||| || ||||| | ||| || ||||| |||||||| || |||| ||| |||| |||||||||| |
|
|
| T |
12483406 |
tcaggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcata |
12483307 |
T |
 |
| Q |
508 |
tgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctc |
577 |
Q |
| |
|
|||||| ||| || || ||||| || ||||| |||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
12483306 |
tgtacaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctc |
12483237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 11 - 524
Target Start/End: Original strand, 13440040 - 13440550
Alignment:
| Q |
11 |
agcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattcc |
110 |
Q |
| |
|
||||||||||||| | |||||||||| | ||||| ||||||| || |||||||| | |||| ||||||||| ||| ||| |||| | | | ||||||| |
|
|
| T |
13440040 |
agcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattcc |
13440139 |
T |
 |
| Q |
111 |
gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg |
210 |
Q |
| |
|
||||||||||| ||||| ||||| || | | ||||||| || ||||| ||||| ||||| |||||||| | ||||||||| ||||||||||| || | |
|
|
| T |
13440140 |
gttgcaccgacttccactccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccg |
13440239 |
T |
 |
| Q |
211 |
cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat |
310 |
Q |
| |
|
||||||| | ||| ||| | || |||| ||| ||||| ||||||||| | ||||| || | |||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
13440240 |
cactaacagactctacaattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaat |
13440339 |
T |
 |
| Q |
311 |
aatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttca |
410 |
Q |
| |
|
|||| | || || || | || |||||||||| || |||||||||||||| ||||||||||| || ||| | |||| || ||| |||||| ||| |
|
|
| T |
13440340 |
gatcaaacccatcctc---ctaatgtttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctca |
13440436 |
T |
 |
| Q |
411 |
ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgt |
510 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| || ||||||| |||||||| ||||||||||| || |||| ||||||||| ||||||| |
|
|
| T |
13440437 |
ggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgt |
13440536 |
T |
 |
| Q |
511 |
acaccaccgagtta |
524 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
13440537 |
acaacaccgagtta |
13440550 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 13448201 - 13448675
Alignment:
| Q |
9 |
tcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccatt |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | ||| ||||||| || |||| || | || | ||||| ||| ||| | | |||| | || | ||||| |
|
|
| T |
13448201 |
tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccatt |
13448300 |
T |
 |
| Q |
109 |
ccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccc |
208 |
Q |
| |
|
| ||||||||||| || || ||||| || | | |||||||||| ||||||||||| ||||| |||||||| | ||||||||| ||||||||||| || |
|
|
| T |
13448301 |
ctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcc |
13448400 |
T |
 |
| Q |
209 |
tgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaaccctta |
308 |
Q |
| |
|
|||||||| ||||| || || || |||| ||| ||||| ||||||||| | ||||| || | |||||||| ||| |||||||||| ||||||||| || |
|
|
| T |
13448401 |
cgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaaccccta |
13448500 |
T |
 |
| Q |
309 |
ataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttctttt |
408 |
Q |
| |
|
|| |||| | |||||||| |||||| ||||||||||||| ||||| || ||||| ||||||||||| ||||| | |||| || ||| |||||| | |
|
|
| T |
13448501 |
atgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttct |
13448597 |
T |
 |
| Q |
409 |
caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat |
486 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| ||| | || || ||||| || ||||||||||| ||||||| |
|
|
| T |
13448598 |
caggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat |
13448675 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 427
Target Start/End: Original strand, 13454674 - 13455087
Alignment:
| Q |
11 |
agcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattcc |
110 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||||| ||||||| || |||| | | |||| ||||||||| ||| ||| |||| |||| | |||||| |
|
|
| T |
13454674 |
agcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattct |
13454773 |
T |
 |
| Q |
111 |
gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg |
210 |
Q |
| |
|
||||||||||| || | ||||| || | || |||||||| | ||||| ||||| ||||| |||||||| | |||||||| ||||||||||| || |
|
|
| T |
13454774 |
gttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactccca |
13454873 |
T |
 |
| Q |
211 |
cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat |
310 |
Q |
| |
|
||||| ||||| || | || |||| ||| ||||| ||||||||| | ||||| || | ||| |||| ||| |||| ||||| ||||||||| |||| |
|
|
| T |
13454874 |
tgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaat |
13454973 |
T |
 |
| Q |
311 |
aatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttca |
410 |
Q |
| |
|
|||| | |||| |||| |||| || |||||||||| ||||| |||||||| |||| |||||||||||| | |||| || ||| |||||| || |
|
|
| T |
13454974 |
gatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctcc |
13455070 |
T |
 |
| Q |
411 |
ggaacaacccatatgaa |
427 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13455071 |
ggaacaacccatatgaa |
13455087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 9 - 546
Target Start/End: Complemental strand, 3417868 - 3417334
Alignment:
| Q |
9 |
tcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccatt |
108 |
Q |
| |
|
||||| ||||||| |||||||||||||| | ||| ||||||| || | ||| || | |||| ||||| ||| |||||||||||| || | ||||| |
|
|
| T |
3417868 |
tcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccatt |
3417769 |
T |
 |
| Q |
109 |
ccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccc |
208 |
Q |
| |
|
| |||||||| || ||||| ||||| || | || |||||||| | ||||||||| | ||||| |||||||| ||||||||| ||||||||||| || |
|
|
| T |
3417768 |
ctgttgcacctacttccactccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcc |
3417669 |
T |
 |
| Q |
209 |
tgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaaccctta |
308 |
Q |
| |
|
||||| ||| ||||||||| || |||| ||||||||||||||||||| | || || || | |||||||| ||| ||||||||| ||||||||| || |
|
|
| T |
3417668 |
tgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaaccccta |
3417569 |
T |
 |
| Q |
309 |
ataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttctttt |
408 |
Q |
| |
|
| |||| | | ||||||||| || ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || |||| || | | |||||| | |
|
|
| T |
3417568 |
acgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttct |
3417472 |
T |
 |
| Q |
409 |
caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatat |
508 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||| || || | ||||||||||| ||||||||||| || |||| | ||||||||| ||||| |
|
|
| T |
3417471 |
caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat |
3417372 |
T |
 |
| Q |
509 |
gtacaccaccgagttatcttgtttcgagttaagccaac |
546 |
Q |
| |
|
||||| ||| |||||| |||||| ||||| ||||||| |
|
|
| T |
3417371 |
gtacaacactgagttaacttgttgtgagttgagccaac |
3417334 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 111 - 478
Target Start/End: Complemental strand, 12641720 - 12641353
Alignment:
| Q |
111 |
gttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccctg |
210 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||| ||||||||| || || |||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
12641720 |
gttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctg |
12641621 |
T |
 |
| Q |
211 |
cactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaat |
310 |
Q |
| |
|
||||||| ||||| || ||| ||| |||| ||||| ||||| ||||||||||| || | |||||| | |||||| || ||||| ||||| || |||| |
|
|
| T |
12641620 |
cactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaat |
12641521 |
T |
 |
| Q |
311 |
aatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttca |
410 |
Q |
| |
|
|| | | | ||||| ||| | | | |||||||||| || || || |||||||| |||||||||||||||||| | |||| | ||| |||||| ||| |
|
|
| T |
12641520 |
gataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctca |
12641421 |
T |
 |
| Q |
411 |
ggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatc |
478 |
Q |
| |
|
||||||||||||| |||||||||| || ||| || |||| ||||||||| |||||||||||||| |
|
|
| T |
12641420 |
ggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatc |
12641353 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 529
Target Start/End: Original strand, 12540523 - 12541040
Alignment:
| Q |
9 |
tcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccatt |
108 |
Q |
| |
|
|||||||||| ||||| |||||||||| | ||| | ||||||| || ||| || | ||||| ||||| ||| |||||| ||||| |||| | ||||| |
|
|
| T |
12540523 |
tcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccatt |
12540622 |
T |
 |
| Q |
109 |
ccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccc |
208 |
Q |
| |
|
| |||||||| || || || ||||| || | ||||||||||| | ||||| ||| | || || |||||||| ||||||||| ||||||||||| || |
|
|
| T |
12540623 |
ctgttgcacctacttctactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcc |
12540722 |
T |
 |
| Q |
209 |
tgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaaccctta |
308 |
Q |
| |
|
|||| ||| ||||| ||| | || || | ||||||||||||||||||| | ||||| || | |||||||| ||| |||||||||| ||||||||| || |
|
|
| T |
12540723 |
cgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaaccccta |
12540822 |
T |
 |
| Q |
309 |
ataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttctttt |
408 |
Q |
| |
|
|| |||| | | ||| ||||| || ||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | |||| || ||| | |||| | |
|
|
| T |
12540823 |
atgatcaaacc---cttttttccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttct |
12540919 |
T |
 |
| Q |
409 |
caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatat |
508 |
Q |
| |
|
|||||||||||||||||||| ||||| | | |||| | | || ||||||||||| |||||||| || | |||||| | ||||||||| ||||| |
|
|
| T |
12540920 |
caggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatat |
12541019 |
T |
 |
| Q |
509 |
gtacaccaccgagttatcttg |
529 |
Q |
| |
|
||||||||| |||||| |||| |
|
|
| T |
12541020 |
gtacaccactgagttaacttg |
12541040 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 524
Target Start/End: Original strand, 28385172 - 28385684
Alignment:
| Q |
9 |
tcagcttcatcaccactgtccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccatt |
108 |
Q |
| |
|
||||||||||| |||| |||||||||| | ||| | ||||||| || ||||| || | |||| ||||| ||| |||||| ||||| |||| | ||||| |
|
|
| T |
28385172 |
tcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccatt |
28385271 |
T |
 |
| Q |
109 |
ccgttgcaccgacctccaccccaatcccatgcacctgtgttatcaacttctcattgtaaaattgttctccatgcatcggccacgtgatcattggaacccc |
208 |
Q |
| |
|
||||| |||| || ||||| ||||| | | || ||||||||| ||||||||| || || ||| |||| |||||||| ||||||||||| || |
|
|
| T |
28385272 |
ccgttacacctacttccactccaattcttcggactgttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcc |
28385371 |
T |
 |
| Q |
209 |
tgcactaactgcctcaacagtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaaccctta |
308 |
Q |
| |
|
|| | ||| ||||| ||| | || |||| || |||||||||| |||| | ||||| || | || ||||| |||| ||| ||||| ||||||||| | |
|
|
| T |
28385372 |
cgcgccaacagcctctacaattgagttccctccgcaatgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctg |
28385471 |
T |
 |
| Q |
309 |
ataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttctttt |
408 |
Q |
| |
|
|| || | | ||||||| ||| || ||||||| ||||| |||||||||| ||| ||||||||||| ||||| | |||| || ||| |||||| | |
|
|
| T |
28385472 |
attatgaaacccttctt---tccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttct |
28385568 |
T |
 |
| Q |
409 |
caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatat |
508 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | |||| ||||||||||| ||||||||||| || ||||| | ||||||||| ||||| |
|
|
| T |
28385569 |
caggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatat |
28385668 |
T |
 |
| Q |
509 |
gtacaccaccgagtta |
524 |
Q |
| |
|
|||||| || |||||| |
|
|
| T |
28385669 |
gtacacaactgagtta |
28385684 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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