View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_21 (Length: 363)
Name: NF4014_low_21
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 16990426 - 16990100
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16990426 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaatccaaaatcacacctctcacaaaaacatccaact |
16990327 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16990326 |
ttcttcttcaccaaatctattcacaagtaataaaattgcagatttacccatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
16990227 |
T |
|
| Q |
220 |
tatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaaattatggatggctagatgcttgtag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
16990226 |
tatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaaattgtgggtggctagatgcttgtag |
16990127 |
T |
|
| Q |
320 |
actttgatttttattttcttcatgaaa |
346 |
Q |
| |
|
|||| ||||||||||||||||||||| |
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| T |
16990126 |
acttcaatttttattttcttcatgaaa |
16990100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 2320042 - 2319713
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
2320042 |
ataattgaaacctctttaagtgtgtgaaacaaagcatgacttaccttcatttctcttccgcagcaattcaaaatcacacctctcacaaaaacatccaact |
2319943 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2319942 |
ttcttcttcaccaaatctactcacaggtaataaaatcgcagatttacacatcatatcaatcgaaacaagtaataattaaaattaagtttttgttttggtt |
2319843 |
T |
|
| Q |
220 |
tatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaaattatggatggctagatgcttgtag |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
2319842 |
tatggtgaaatttagagaattgtaatggaacacagt-cctcacaaagcttcaagtactctttgtttttcaatcaaattgtgggtggctagatgcttgtag |
2319744 |
T |
|
| Q |
320 |
actttgatttttattttcttcatgaaaattg |
350 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
2319743 |
acttcaatttttattttcttcatgaaaattg |
2319713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 37242174 - 37242338
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242174 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
37242273 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37242274 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
37242338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 1258886 - 1259050
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1258886 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
1258985 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
184 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1258986 |
tttttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
1259050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 34873526 - 34873367
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34873526 |
ataattgaaacct-tttaagtgggtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
34873428 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatc |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34873427 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatc |
34873367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 54712943 - 54712861
Alignment:
| Q |
212 |
ttttggtttatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaa |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||| ||||||| ||||| |||||||||||| |
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|
| T |
54712943 |
ttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcataaagcctcaaatattctttatttttcaatcaa |
54712861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 31234337 - 31234501
Alignment:
| Q |
20 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactgcaattcaaaatcacacctctcacaaaaacatccaact |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31234337 |
ataattgaaacctctttaagtgtgtgaaccaaagcatgacttaccttcatttctcttccactacaattcaaaatcacacctctcacaaaaacatccaact |
31234436 |
T |
|
| Q |
120 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31234437 |
ttcttcttcaccaaatctactcacaagtaataaaattgcagatttacccatcatatcaatcgaaa |
31234501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 41664735 - 41664641
Alignment:
| Q |
206 |
tttttgttttggtttatggtgaaatttagagaattgtaatggaacacagtccctcacaaagcttcaaatactctttgtttttcaatcaaattatg |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | |||| |||||| ||||| |||||| ||||| ||||||||||||| |||| |
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|
| T |
41664735 |
ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcttaaagcctcaaattttctttatttttcaatcaaactatg |
41664641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 32972224 - 32972319
Alignment:
| Q |
206 |
tttttgttttggtttatggtgaaatttagagaattgtaatggaacacagtccctca-caaagcttcaaatactctttgtttttcaatcaaattatg |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||| |||||| | ||| ||||||||||||| |||| |
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|
| T |
32972224 |
ttttttttttggtttatggtgaaatttagagaattgtaatgaagcacaatccctcataaaagcctcaaattttatttatttttcaatcaaactatg |
32972319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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