View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_23 (Length: 354)
Name: NF4014_low_23
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 6479765 - 6480090
Alignment:
| Q |
17 |
aaattttaaatcttacacatttcttggacatacagaatcttatttcttttcttaaaatccaatgtttaagctctattatgattcatgggatctccgcaag |
116 |
Q |
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| T |
6479765 |
aaattttaaatcttacacatttcttggatatacaaaatcttatttcttttcttaaaatccaatgtttaagctctattatgattcatgggatctccgcaag |
6479864 |
T |
|
| Q |
117 |
caaagtggccaagatacattgaagcgcgttacaaatatctatagcattgtacatgcatcggcagcctttatgaatgaattcatcttctatatatttgact |
216 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6479865 |
caaattggccaagatatattgaagcgcgttacaaatatctataacattgtacatgcatcggcagcctttatgaatgaattcatcttctatatatttaact |
6479964 |
T |
|
| Q |
217 |
accctannnnnnnatacatcacttagctttcaagaattcaataatattctttgaaaatccacaatgtccatcaccacaatcgattacgctctccctaaca |
316 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6479965 |
accctatttttttatacatcacttagctttcaagaattcaataatattctttgaaaatccacaatgtccatcaccacaatcgattacgctctccctaaca |
6480064 |
T |
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| Q |
317 |
aaaaccacaacaagtacgacgtcttc |
342 |
Q |
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||||||||||||||||||| |||||| |
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| T |
6480065 |
aaaaccacaacaagtacgatgtcttc |
6480090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 6489654 - 6489485
Alignment:
| Q |
151 |
atatctatagcattgtacatgcatcggcagcctttatgaatgaattcatcttctatatatttgactaccctannnnnnn--atacatcacttagctttca |
248 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||| ||||||| |
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| T |
6489654 |
atatctataacattgtacatgtatcggcagcctttatgaatgaattcaccttttatatatttgactagcctatttttttttatacatcactt-gctttca |
6489556 |
T |
|
| Q |
249 |
agaattcaataatattctttgaaaatccacaatgtccatcaccacaatcgattacgctctccctaacaaaa |
319 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
6489555 |
agaattcaataatattctttgaaaatccacgttgtccatcaccacaatcggttatgctctccctaacaaaa |
6489485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 38702531 - 38702399
Alignment:
| Q |
17 |
aaattttaaatcttacacatttcttggacatacagaatcttatttcttttcttaaaatccaatgtttaagctctattatgattcatgggatctccgcaag |
116 |
Q |
| |
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||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||| || ||| |
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| T |
38702531 |
aaattttaactgttacagatttcttggacatgcagaatcttatttcttttcttaaaatcccgtgtttaaactctattaggattcaggggatcttcgtaag |
38702432 |
T |
|
| Q |
117 |
caaagtggccaagatacattgaagcgcgttaca |
149 |
Q |
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| T |
38702431 |
gaaagtggccaagatacattgaagcgcattaca |
38702399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 51946714 - 51946826
Alignment:
| Q |
230 |
atacatcacttagctttcaagaattcaataatattctttgaaaatccacaatgtccatcaccacaatcgattacgctctccctaacaaaaaccacaacaa |
329 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
51946714 |
atacatcacttagctctcaagaattcaataatattcattgaaaatccacgatgtccatcaccacaatcgattacgctgtccctaataaaactcacaacaa |
51946813 |
T |
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| Q |
330 |
gtacgacgtcttc |
342 |
Q |
| |
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| |||| |||||| |
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| T |
51946814 |
gcacgatgtcttc |
51946826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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