View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4014_low_30 (Length: 327)
Name: NF4014_low_30
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 51352486 - 51352185
Alignment:
| Q |
20 |
agatagtgttccaatgactatcatctacacctcttcccgtattaacatttatc---tttttcatgggagattatttgtaagtaaagtaacagcgttttta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51352486 |
agatagtgttccaatgactatcatctacacctcttcccgtattaacatttatcatctttttcatgggagattatttgtaagtaaagtaacagcgttttta |
51352387 |
T |
|
| Q |
117 |
aattttaatattggatgaatgattcattttgttgttgttgttacaggcctgaggacgttgatgaagttcctgaacaactacaacggggttacgcaatttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51352386 |
aattttaatattggatgaatgattcattttgttgttgttgttacaggcctgaggacgttgatgaagttcctgaacaactacaacggggttacgcaatttt |
51352287 |
T |
|
| Q |
217 |
aatgtgtagacaattgagtctacacttgagagggggtagctcac-aattgaatatgaatgaatattacagatttgcataaaatatctatatttcggtctc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
|
|
| T |
51352286 |
aatgtgtagacaattgagtctacacttgagagggggtagctcacaaattgaatatgaatgaatattacggatttgcataaaatatctatatctcgatctc |
51352187 |
T |
|
| Q |
316 |
tg |
317 |
Q |
| |
|
|| |
|
|
| T |
51352186 |
tg |
51352185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University