View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_33 (Length: 323)
Name: NF4014_low_33
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 45 - 309
Target Start/End: Original strand, 5934013 - 5934278
Alignment:
| Q |
45 |
gtagtgaaggcaggaccccacacaagtttttgtacatagg-tccacgttacattacattaaataagtgttctttcggctgaaataaataaatataacttc |
143 |
Q |
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| T |
5934013 |
gtagtgaaggcaggaccccacataagtttttgtgtatagggtccacgttgcattacattaaataagtgttctttcggctgaaataaataaatataacatc |
5934112 |
T |
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| Q |
144 |
accaaaacagcaagtaaaggaagaagatatggagaacataatcttaactcctttttgttagtatataaatttggcatttccaaaaccatatcccagccta |
243 |
Q |
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| T |
5934113 |
accaaaacagcaagtaaaggaagaagatatggagaacataatcttaactcctttttgttagtatataaatttggcatttccaaaaccatatcccagccta |
5934212 |
T |
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| Q |
244 |
gcttagagagagtaaataacacagtacatataagataaaatgattgtctacatccctatagttaga |
309 |
Q |
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| T |
5934213 |
gcttagagagagtaaataacacagtacatataagataaaatgattgtctacatccctatagttaga |
5934278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 5933934 - 5933995
Alignment:
| Q |
45 |
gtagtgaaggcaggaccccacacaagtttttgtacata-ggtccacgttacattacattaaa |
105 |
Q |
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| T |
5933934 |
gtagtgaaggcaggaccccacataagtttttgtgtatagggtccacgttgcattacattaaa |
5933995 |
T |
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