View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_34 (Length: 315)

Name: NF4014_low_34
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_34
NF4014_low_34
[»] scaffold0009 (2 HSPs)
scaffold0009 (19-196)||(93275-93452)
scaffold0009 (194-307)||(93097-93210)
[»] chr7 (2 HSPs)
chr7 (95-196)||(19053464-19053565)
chr7 (74-196)||(42301324-42301444)
[»] chr3 (3 HSPs)
chr3 (95-196)||(50809004-50809105)
chr3 (95-196)||(50866757-50866858)
chr3 (74-170)||(22761485-22761581)
[»] chr6 (2 HSPs)
chr6 (74-150)||(18314690-18314766)
chr6 (146-190)||(18316811-18316855)
[»] scaffold0511 (1 HSPs)
scaffold0511 (146-190)||(795-839)
[»] chr8 (1 HSPs)
chr8 (157-196)||(2685752-2685791)
[»] chr2 (1 HSPs)
chr2 (157-196)||(45009176-45009215)


Alignment Details
Target: scaffold0009 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 93452 - 93275
Alignment:
Q  19 tgaatttcatcatggtcttagcttagtcgaatggtgattagtgtctgatcaaatattggtaagtttcaattttctattaacacgcatcatttgttgcatt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  93452 tgaatttcatcatggtcttagcttagtcgaatggtgattactgtctgatcaaatattggtaagtttcaattttctattaacaagcatcatttgttgcatt 93353  T
Q  119 tttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttaagattttttaagctactatgttgtagttt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  93352 tttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttcagattttttaagctactgtgttgtagttt 93275  T

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Target: scaffold0009; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 93210 - 93097
Alignment:
Q  194 tttggtgcagggttttcaatgtcaagggtttatgattatatcaaagacctgaaaaataatctggacacatacaaaattgggtttagagtgttagattcgt 293  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  93210 tttggtgcaaggttttcaatgtcgagggtttatgattatatcaaggacctgaaaaataatctggacatatacaaaattgggtttagagtgttagattcgt 93111  T
Q  294 ggaatgtctgtgct 307  Q
    |||||||| |||||    
T  93110 ggaatgtcggtgct 93097  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 19053464 - 19053565
Alignment:
Q  95 ttaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttaagattttttaagctactatgttgtagt 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||    
T  19053464 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagt 19053563  T
Q  195 tt 196  Q
    ||    
T  19053564 tt 19053565  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 42301444 - 42301324
Alignment:
Q  74 ttggtaagtttcaattttctattaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc-tagcacgatgtatgttaagatt 172  Q
    |||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |    
T  42301444 ttggtaagtttcaagt--ctattaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatccttaggatgatgtatgttaaga-t 42301348  T
Q  173 ttttaagctactatgttgtagttt 196  Q
    ||||||||||| |||||| |||||    
T  42301347 ttttaagctaccatgttgcagttt 42301324  T

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Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 50809105 - 50809004
Alignment:
Q  95 ttaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttaagattttttaagctactatgttgtagt 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||    
T  50809105 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagt 50809006  T
Q  195 tt 196  Q
    ||    
T  50809005 tt 50809004  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 50866757 - 50866858
Alignment:
Q  95 ttaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttaagattttttaagctactatgttgtagt 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||    
T  50866757 ttaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatattaagattttttaagctactatgttgcagt 50866856  T
Q  195 tt 196  Q
    ||    
T  50866857 tt 50866858  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 22761581 - 22761485
Alignment:
Q  74 ttggtaagtttcaattttctattaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcacgatgtatgttaaga 170  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22761581 ttggaaagtttcaagtttctattaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcctagcatgatgtatgttaaga 22761485  T

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Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 18314690 - 18314766
Alignment:
Q  74 ttggtaagtttcaattttctattaacacgcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc 150  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18314690 ttggtaagtttcaagtttctattaacaagcatcatttgttgcatttttatctgtcaaatatcttcatttgttaatcc 18314766  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 18316811 - 18316855
Alignment:
Q  146 aatcctagcacgatgtatgttaagattttttaagctactatgttg 190  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  18316811 aatcctagcatgatgtatgttaagattttttaagctaccatgttg 18316855  T

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Target: scaffold0511 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 795 - 839
Alignment:
Q  146 aatcctagcacgatgtatgttaagattttttaagctactatgttg 190  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  795 aatcctagcatgatgtatgttaagattttttaagctaccatgttg 839  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 2685791 - 2685752
Alignment:
Q  157 gatgtatgttaagattttttaagctactatgttgtagttt 196  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  2685791 gatgtatattaagattttttaagctactatgttgcagttt 2685752  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 45009215 - 45009176
Alignment:
Q  157 gatgtatgttaagattttttaagctactatgttgtagttt 196  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  45009215 gatgtatattaagattttttaagctactatgttgcagttt 45009176  T

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