View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_38 (Length: 305)
Name: NF4014_low_38
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 40998028 - 40997764
Alignment:
| Q |
18 |
gatttgtctatgcattaaaagattacataacatatcatttattttacgttgcaatgactcatagactgaatcttgattcttcatgtttgattcaaaaacc |
117 |
Q |
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| T |
40998028 |
gatttgtctatgcattaaaa-attacagaacatatcatttattttacgttgcaatgactcatagactgaatcttgattcttcatgtttgattcaaaaacc |
40997930 |
T |
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| Q |
118 |
aagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaattataannnnnnnnnnnnnaaaaataaaccacatataatata |
217 |
Q |
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| T |
40997929 |
aagagagcagtgctcatttcgcagaaatatataaacaataataatcaccattaaaaaattacaa----ttttattttaaaaataaaccacatataatata |
40997834 |
T |
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| Q |
218 |
tctctttaattttctcttacttacttcctctattttgctaataatattattttttagcttaatttaatca |
287 |
Q |
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| T |
40997833 |
tctctttaattttctcttacttacttcctctattttgctaataatattattttttagcttaattcaatca |
40997764 |
T |
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