View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_41 (Length: 304)
Name: NF4014_low_41
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 100 - 297
Target Start/End: Original strand, 24152729 - 24152926
Alignment:
| Q |
100 |
gttgtgtggtaattgaggtttgataaactattagcaaggttggaggtcgtattgcattgagatcatagagtgtaattttcttaaagtctaaagttagagc |
199 |
Q |
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| T |
24152729 |
gttgtgtggtaattgaggtttgataaactattagcaaggttggaggtggtattgcattgagatcatagagtgtaattttcttaaagtctcaagttagagc |
24152828 |
T |
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| Q |
200 |
ttaatgacatatgtttagtgttcaaattttgtattcaatttattatgtgggtttgcataatttgatatgccaaatttgatgagtatttgcctatgctt |
297 |
Q |
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| T |
24152829 |
ttaatgacatatgtttagtgttcaaattttgtattcaatttatagtgtgggtttgcataatttgatatgccaaatttgatgactatttgcttatgctt |
24152926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 24169747 - 24169828
Alignment:
| Q |
203 |
atgacatatgtttagtgttcaaattttgtattcaatttattatgtgggtttgcataatttgatatgccaaatttgatgagta |
284 |
Q |
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| T |
24169747 |
atgacatatgtttagtgttcacattttgtattgaatttataatgtgggtttgcataatttgatatgccaaatttgatgagta |
24169828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 24113643 - 24113700
Alignment:
| Q |
227 |
tttgtattcaatttattatgtgggtttgcataatttgatatgccaaatttgatgagta |
284 |
Q |
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| T |
24113643 |
tttgtattgaatttataatatgggtttgcatgatttgatatgccaaatttgatgagta |
24113700 |
T |
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