View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4014_low_47 (Length: 290)
Name: NF4014_low_47
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 45315899 - 45316079
Alignment:
| Q |
11 |
caaaggggagtatctagct-ggttggtgtagcccaattttgcaattaggttacaattttctgttgccgatcaaattaggctacaattaaagtaacaaatg |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
45315899 |
caaaggggagtatctagcttggttggtgtagcccaattttgcaattaggttacaattttctgttgctgatacaattaggctacaattaaagtaacaaatg |
45315998 |
T |
|
| Q |
110 |
gaatttcactgcttgaagtagtgttagtaggggcagcttt-ggcccgtaaatgaaagttgtcaccatatatttatttgtct |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45315999 |
gaatttcactgcttgaagtagtgttagtaggggcagctttgggcccgtaaatgaaagttgtcaccatatatttatttgtct |
45316079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 45316171 - 45316205
Alignment:
| Q |
241 |
tttttaaaaaatttatcataattttattatatatt |
275 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45316171 |
tttttaaaaaatttatcatgattttattatatatt |
45316205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 27761559 - 27761639
Alignment:
| Q |
55 |
taggttacaattttctgttgccgatcaaattaggctacaattaaagtaacaaatggaatttcactgcttgaagtagtgtta |
135 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27761559 |
taggttacaattttctgttgtttataaaattaggctacaattaaagtaataaatggaatttcactgcttgaagtagggtta |
27761639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University