View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_49 (Length: 271)
Name: NF4014_low_49
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 11034181 - 11034435
Alignment:
| Q |
1 |
gttacagatgacgaaggcggcacatgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatg |
100 |
Q |
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| T |
11034181 |
gttacagatgacgaaggcggcacatgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatg |
11034280 |
T |
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| Q |
101 |
taaagtgtattgacatgtggctccattcgcatttgaattgccccgtttgtcgttccagtgccgccccttcgccggcagtaaatgcacatcatcacagtat |
200 |
Q |
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| T |
11034281 |
taaagtgtattgacatgtggctccattcgcatttgaattgccccgtttgtcgttccagtgccgccccttcgccggcagtaaatgcacatcatcacagtat |
11034380 |
T |
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| Q |
201 |
agatatgagttgattggtgcgatggtgaaattgacaaattgttagccttgttttt |
255 |
Q |
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| T |
11034381 |
agatatgagtcgattggtgcgatggtgaaattgacaaattgttagccttgttttt |
11034435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 11035869 - 11036039
Alignment:
| Q |
5 |
cagatgacgaaggcggcacatgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatgtaaa |
104 |
Q |
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| T |
11035869 |
cagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttacactcttttcatgtttc |
11035968 |
T |
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| Q |
105 |
gtgtattgacatgtggctccattcgcatttgaattgccccgtttgtcgttccagtgccgccccttcgccgg |
175 |
Q |
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| T |
11035969 |
atgtattgacatgtggcttcattcacattcgaattgccccgtttgtcgttccagtaccgccccttcaccgg |
11036039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 30295588 - 30295464
Alignment:
| Q |
25 |
tgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcatgtaaagtgtattgacatgtggctcc |
124 |
Q |
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| T |
30295588 |
tgtgctgtgtgcttaggagactttgaggaaggtgaggagttgagggctatgccttcttgcatgcactctttccatgtaccatgcattgatatgtggctcc |
30295489 |
T |
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| Q |
125 |
attcgcatttgaattgccccgtttg |
149 |
Q |
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| T |
30295488 |
tttcacatctcaattgtcctgtttg |
30295464 |
T |
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