View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_51 (Length: 267)
Name: NF4014_low_51
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_51 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 93718 - 93473
Alignment:
| Q |
17 |
aaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaca |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
93718 |
aaaatgattatacaatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttgatattttgtgtttgcaggaagagcaaaca |
93619 |
T |
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| Q |
117 |
aatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatatatcttctagatcgggtaagttgaacttctttaaattctctattttg |
213 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
93618 |
aatgagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatatatcttctagatcaggtaagttgaacttctttaaattctct------ |
93525 |
T |
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| Q |
214 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
265 |
Q |
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| T |
93524 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
93473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 18314373 - 18314624
Alignment:
| Q |
20 |
atgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaacaaat |
119 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18314373 |
atgattatacgatgcaatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
18314472 |
T |
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| Q |
120 |
gagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatatatcttctagatcgggtaagttgaa---cttctttaaattctctattttg |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
18314473 |
gagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatatatcttatagatttggtaagttgaacttcttctttaaattctctattttg |
18314572 |
T |
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| Q |
214 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
265 |
Q |
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| T |
18314573 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
18314624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 22761898 - 22761647
Alignment:
| Q |
20 |
atgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaacaaat |
119 |
Q |
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| T |
22761898 |
atgattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
22761799 |
T |
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| Q |
120 |
gagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatatatcttctagatcgggtaagttgaa---cttctttaaattctctattttg |
213 |
Q |
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||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||| |
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| T |
22761798 |
gagcaagtgatgatggaaagggaaatagcacaaaagaggagaattttatatatcttatcgattgggtaagttgaacttcttctttaaattctctattttg |
22761699 |
T |
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| Q |
214 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
265 |
Q |
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| T |
22761698 |
gatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
22761647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 42301763 - 42301510
Alignment:
| Q |
17 |
aaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaca |
116 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42301763 |
aaaatgattatacgatgtgatatcataacttattccacctcaaagtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaaca |
42301664 |
T |
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| Q |
117 |
aatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatatatcttctagatcgggtaagttga---acttctttaaattctctatt |
210 |
Q |
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| T |
42301663 |
aatgagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatatatcttctagattgggtaagttgagcttcttctttaaattctctatt |
42301564 |
T |
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| Q |
211 |
ttggatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
265 |
Q |
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| T |
42301563 |
ttggatttcttt-aatcttctttaaattaatatattgtttttggcatgtgcatca |
42301510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 31295172 - 31295311
Alignment:
| Q |
17 |
aaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaca |
116 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31295172 |
aaaatgattatacgatgcgatatcatatcttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaacc |
31295271 |
T |
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| Q |
117 |
aatgagcaggtgatgatggaaa---aaatagcacaaaaga |
153 |
Q |
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| T |
31295272 |
aatgagcaggtgatgatggaaagggaaatagcacaaaaga |
31295311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 2367984 - 2367730
Alignment:
| Q |
17 |
aaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaaca |
116 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| |
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| T |
2367984 |
aaaattattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttatgtttgcatgaagagcaaaca |
2367885 |
T |
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| Q |
117 |
aatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatatatcttctagatcgggtaagttga---acttctttaaattctctatt |
210 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
2367884 |
aatgagcaggcgatgatggaaagggaaatagcacaaaagaggagaattttatatatcttctagattgggtaagttgaccttcttctttaaattctctatt |
2367785 |
T |
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| Q |
211 |
ttggatttctttcaatcttctttaaattaatatattgtttttggcatgtgcatca |
265 |
Q |
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| T |
2367784 |
ttggatttctttccatcttctttaaattaatatattgtttttggcatgtgcatca |
2367730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 2777381 - 2777434
Alignment:
| Q |
85 |
ttcatattttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaa |
138 |
Q |
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||||||||||||||||||||||||| |||| | |||||| ||||||||||||| |
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| T |
2777381 |
ttcatattttgtgtttgcaggaagaccaaaaaggtgagcaagtgatgatggaaa |
2777434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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