View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_52 (Length: 261)

Name: NF4014_low_52
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_52
NF4014_low_52
[»] chr4 (14 HSPs)
chr4 (1-251)||(54709948-54710198)
chr4 (8-65)||(51951784-51951841)
chr4 (58-105)||(27873660-27873707)
chr4 (8-55)||(35344900-35344947)
chr4 (58-105)||(50457933-50457980)
chr4 (8-65)||(19387710-19387768)
chr4 (8-65)||(21366631-21366689)
chr4 (8-65)||(50534733-50534791)
chr4 (8-65)||(51363109-51363167)
chr4 (8-65)||(53854451-53854509)
chr4 (8-65)||(54574962-54575020)
chr4 (9-65)||(407855-407911)
chr4 (58-114)||(6285311-6285366)
chr4 (8-55)||(38591776-38591824)
[»] chr1 (8 HSPs)
chr1 (8-55)||(30289932-30289980)
chr1 (8-65)||(5981272-5981330)
chr1 (9-55)||(42234941-42234987)
chr1 (8-65)||(51057173-51057231)
chr1 (8-65)||(41999917-41999975)
chr1 (8-65)||(42863967-42864025)
chr1 (9-55)||(45475866-45475912)
chr1 (58-114)||(47383855-47383910)
[»] chr8 (10 HSPs)
chr8 (8-65)||(9013786-9013843)
chr8 (7-50)||(39901674-39901718)
chr8 (58-105)||(42701413-42701460)
chr8 (8-65)||(2714651-2714709)
chr8 (8-65)||(17718744-17718802)
chr8 (8-65)||(25186001-25186059)
chr8 (8-65)||(41862322-41862380)
chr8 (9-65)||(5946149-5946206)
chr8 (7-55)||(38631753-38631802)
chr8 (9-65)||(45236588-45236645)
[»] chr6 (4 HSPs)
chr6 (58-105)||(19281178-19281225)
chr6 (8-65)||(2593874-2593932)
chr6 (8-65)||(2892290-2892348)
chr6 (58-114)||(24224193-24224249)
[»] chr3 (12 HSPs)
chr3 (58-105)||(40419847-40419894)
chr3 (8-65)||(33550489-33550547)
chr3 (8-65)||(44222931-44222989)
chr3 (8-65)||(48739255-48739313)
chr3 (8-65)||(51170055-51170113)
chr3 (8-54)||(52864603-52864649)
chr3 (8-65)||(55453266-55453324)
chr3 (9-65)||(46134458-46134515)
chr3 (8-55)||(24100394-24100442)
chr3 (8-55)||(29625849-29625897)
chr3 (8-63)||(42291946-42292002)
chr3 (8-55)||(52629066-52629114)
[»] chr2 (7 HSPs)
chr2 (58-105)||(12730072-12730119)
chr2 (8-65)||(23901880-23901938)
chr2 (8-65)||(27651056-27651114)
chr2 (8-65)||(37255359-37255417)
chr2 (5-65)||(40037244-40037305)
chr2 (8-55)||(21734922-21734970)
chr2 (8-55)||(32856458-32856506)
[»] scaffold0372 (1 HSPs)
scaffold0372 (8-65)||(11155-11213)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-65)||(13784-13842)
[»] chr7 (4 HSPs)
chr7 (8-65)||(5183847-5183905)
chr7 (8-65)||(27018219-27018277)
chr7 (8-65)||(33839737-33839795)
chr7 (8-65)||(45690119-45690177)
[»] chr5 (5 HSPs)
chr5 (8-65)||(739726-739784)
chr5 (8-65)||(6901901-6901959)
chr5 (8-65)||(27938999-27939057)
chr5 (58-114)||(4149698-4149753)
chr5 (9-44)||(5120136-5120172)
[»] scaffold0949 (1 HSPs)
scaffold0949 (8-55)||(1981-2029)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-63)||(176758-176814)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 54709948 - 54710198
Alignment:
Q  1 tactcatgaagaatggtggataatttactcaaccaataaacattaaccacataagtgcatttttattgattggtggacaaattacccatcattattcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||| |||||||||| ||||||| |||    
T  54709948 tactcatgaagaatggtggataatttactcaaccaataaacattaattacataagtgcatttttattggttggtggataaattacccaccattatttaaa 54710047  T
Q  101 ggtaaatatagaaagnnnnnnnnntcaattaaggata-caaaactatcgtgtgatgtctttgcaccaaaggaagataaaaccttttacttttctttcaca 199  Q
    | |||||||||||||         ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54710048 gataaatatagaaagaaaaaaaa-tcaattaaggatatcaaaactatcgtgtgatgtctttgcaccaaaggaagataaaaccttttacttttctttcaca 54710146  T
Q  200 ttcaataataacacgaaacaacaaactttctattatctttctctcctctgtg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54710147 ttcaataataacacgaaacaacaaactttctattatctttctctcctctgtg 54710198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 51951841 - 51951784
Alignment:
Q  8 gaagaatggtggataatttactcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||  ||||||||    
T  51951841 gaagaatggtgggtaatttacacaaccaatatacattagccacataagcacattttta 51951784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 27873660 - 27873707
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    |||||| ||||||||||||| |||||||||| |||| |||||||||||    
T  27873660 cattttcattgattggtggataaattacccaccattcttcaaaggtaa 27873707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 35344947 - 35344900
Alignment:
Q  8 gaagaatggtggataatttactcaaccaataaacattaaccacataag 55  Q
    |||||||||||||||||||||  |||||||| |||||| |||||||||    
T  35344947 gaagaatggtggataatttaccaaaccaatacacattagccacataag 35344900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 50457933 - 50457980
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    |||||| ||||||||||||| |||||||||| |||| |||||||||||    
T  50457933 cattttcattgattggtggataaattacccaccattcttcaaaggtaa 50457980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 19387710 - 19387768
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  19387710 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 19387768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 21366631 - 21366689
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  21366631 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 21366689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 50534791 - 50534733
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  50534791 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 50534733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 51363167 - 51363109
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  51363167 gaagaatggtgggtaatttactccaaccaatacacattagccacataagcacattttta 51363109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 53854451 - 53854509
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  53854451 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 53854509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 54574962 - 54575020
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  54574962 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 54575020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 407911 - 407855
Alignment:
Q  9 aagaatggtggataatttactcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||  | ||||||||| |||||| |||||||||  ||||||||    
T  407911 aagaatggtggataattaccccaaccaatacacattagccacataagcacattttta 407855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 6285366 - 6285311
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaaatatagaaa 114  Q
    ||||||||||| |||||||  |||||||||| |||| ||||||||| ||||||||||    
T  6285366 catttttattggttggtgggtaaattacccaccattcttcaaaggt-aatatagaaa 6285311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 38591824 - 38591776
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataag 55  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||    
T  38591824 gaagaatggtgggtaatttacctcaaccaatacacattagccacataag 38591776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30289932 - 30289980
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataag 55  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  30289932 gaagaatggtggataatttacctcaaccaatacacattaaccacataag 30289980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 5981330 - 5981272
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  5981330 gaagaatggtggataatttactccaaccaatacacattagccacataagcacattttta 5981272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 42234987 - 42234941
Alignment:
Q  9 aagaatggtggataatttactcaaccaataaacattaaccacataag 55  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  42234987 aagaatgatggataatttacccaaccaatacacattaaccacataag 42234941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 51057231 - 51057173
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||||||||  ||||||||    
T  51057231 gaagaatggtggataatttacctcaactaatacacattaaccacataagcacattttta 51057173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 41999975 - 41999917
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  41999975 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 41999917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 42864025 - 42863967
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  42864025 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 42863967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 45475866 - 45475912
Alignment:
Q  9 aagaatggtggataatttactcaaccaataaacattaaccacataag 55  Q
    ||||||||||| |||||||| ||||||||| |||||| |||||||||    
T  45475866 aagaatggtgggtaatttacccaaccaatacacattagccacataag 45475912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 47383855 - 47383910
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaaatatagaaa 114  Q
    ||||||||||| |||||||  |||||||||| |||| ||||||||| ||||||||||    
T  47383855 catttttattggttggtgggtaaattacccaccattcttcaaaggt-aatatagaaa 47383910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 9013843 - 9013786
Alignment:
Q  8 gaagaatggtggataatttactcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||  |||||||| |||||| |||||||||| ||||||||    
T  9013843 gaagaatggtgggtaatttacctaaccaatacacattagccacataagtacattttta 9013786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 39901718 - 39901674
Alignment:
Q  7 tgaagaatggtggataattta-ctcaaccaataaacattaaccac 50  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||    
T  39901718 tgaagaatggtggataatttacctcaaccaataaacattagccac 39901674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 42701413 - 42701460
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||||    
T  42701413 catttttattggttggtgggtaaattacccaccattattcaaaggtaa 42701460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 2714709 - 2714651
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  2714709 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 2714651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 17718744 - 17718802
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  17718744 gaagaatggtgggtaatttactccaaccaatacacattagccacataagcacattttta 17718802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 25186059 - 25186001
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  25186059 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 25186001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 41862380 - 41862322
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  41862380 gaagaatggtgggtaatttactccaaccaatacacattagccacataagcacattttta 41862322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 5946206 - 5946149
Alignment:
Q  9 aagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    ||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  5946206 aagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 5946149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 38631802 - 38631753
Alignment:
Q  7 tgaagaatggtggataattta-ctcaaccaataaacattaaccacataag 55  Q
    ||||||||||||||||||||| | ||||||||| | ||||||||||||||    
T  38631802 tgaagaatggtggataatttatcccaaccaatacatattaaccacataag 38631753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 45236588 - 45236645
Alignment:
Q  9 aagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    ||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  45236588 aagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 45236645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 19281178 - 19281225
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  19281178 catttttattggttggtgggcaaattacccaccattcttcaaaggtaa 19281225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 2593874 - 2593932
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  2593874 gaagaatggtggataatttatcccaaccaatacacattagccacataagcacattttta 2593932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 2892348 - 2892290
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  2892348 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 2892290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 24224193 - 24224249
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaaatatagaaa 114  Q
    |||||| |||| |||||||  |||||||||| |||| ||||||||||||| ||||||    
T  24224193 cattttcattggttggtgggtaaattacccaccattcttcaaaggtaaatctagaaa 24224249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 40419894 - 40419847
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||||    
T  40419894 cattttcattgattggtgggtaaattacccatcattcttcaaaggtaa 40419847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33550489 - 33550547
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  33550489 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 33550547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 44222989 - 44222931
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  44222989 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 44222931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 48739255 - 48739313
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  48739255 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 48739313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 51170055 - 51170113
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  51170055 gaagaatggtgggtaatttactccaaccaatacacattagccacataagcacattttta 51170113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 52864649 - 52864603
Alignment:
Q  8 gaagaatggtggataatttactcaaccaataaacattaaccacataa 54  Q
    |||||||||||| |||||||||||||||||| |||||| | ||||||    
T  52864649 gaagaatggtgggtaatttactcaaccaatatacattagctacataa 52864603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 55453266 - 55453324
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  55453266 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 55453324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 46134515 - 46134458
Alignment:
Q  9 aagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||| ||||||||| |||||||||| |||||| |||||||||  ||||||||    
T  46134515 aagaatggtgaataatttacctcaaccaatacacattagccacataagcacattttta 46134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 24100442 - 24100394
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataag 55  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||    
T  24100442 gaagaatggtgggtaatttacctcaaccaatacacattagccacataag 24100394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 29625849 - 29625897
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataag 55  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||    
T  29625849 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataag 29625897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 42292002 - 42291946
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcatttt 63  Q
    |||||||||||| ||||||| | ||||||||| |||||| |||||||||| ||||||    
T  42292002 gaagaatggtgggtaatttaccccaaccaatacacattagccacataagtacatttt 42291946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 52629114 - 52629066
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataag 55  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||    
T  52629114 gaagaatggtggataatttaccccaaccaatacacattagccacataag 52629066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 12730119 - 12730072
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaa 105  Q
    |||||| ||||||||||||  ||||||||||||||| |||||||||||    
T  12730119 cattttcattgattggtgggtaaattacccatcattcttcaaaggtaa 12730072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 23901938 - 23901880
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  23901938 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 23901880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 27651056 - 27651114
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  27651056 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 27651114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 37255359 - 37255417
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||| | ||||||||| ||||||||||||||||  ||||||||    
T  37255359 gaagaatggtgggtaatttatcccaaccaatacacattaaccacataagcacattttta 37255417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 40037305 - 40037244
Alignment:
Q  5 catgaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||| |||| ||| |||||||| |||||||||| ||||||||||||||||  ||||||||    
T  40037305 catgaaaaatgatgggtaatttacctcaaccaatacacattaaccacataagcacattttta 40037244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 21734922 - 21734970
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataag 55  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||    
T  21734922 gaagaatggtgggtaatttacctcaaccaatatacattagccacataag 21734970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 32856458 - 32856506
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataag 55  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||    
T  32856458 gaagaatggtgggtaatttacctcaaccaatatacattagccacataag 32856506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11155 - 11213
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  11155 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 11213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 13784 - 13842
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  13784 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 13842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5183847 - 5183905
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  5183847 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 5183905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 27018277 - 27018219
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||||||    
T  27018277 gaagaatggtgggtaatttactccaaccaatacacattagccacataagcacattttta 27018219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 33839737 - 33839795
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  33839737 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 33839795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 45690119 - 45690177
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||||||||||| | ||||||||| |||||| |||||||||  ||||||||    
T  45690119 gaagaatggtggataatttaccccaaccaatacacattagccacataagcacattttta 45690177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 739726 - 739784
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| ||||||| | ||||||||| ||||||||||||||||  ||||||||    
T  739726 gaagaatggtgggtaatttatcccaaccaatacacattaaccacataagcacattttta 739784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 6901959 - 6901901
Alignment:
Q  8 gaagaatggtggataatttac-tcaaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| |||||||||| |||||| |||||||||  ||||||||    
T  6901959 gaagaatggtgggtaatttacctcaaccaatacacattagccacataagcacattttta 6901901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 27939057 - 27938999
Alignment:
Q  8 gaagaatggtggataatttactc-aaccaataaacattaaccacataagtgcattttta 65  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||||  ||||||||    
T  27939057 gaagaatggtgggtaatttaccccaaccaatacacattaaccacataagcacattttta 27938999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 4149753 - 4149698
Alignment:
Q  58 catttttattgattggtggacaaattacccatcattattcaaaggtaaatatagaaa 114  Q
    ||||||||||| |||||||  |||||||||| |||| ||||||||| ||||||||||    
T  4149753 catttttattggttggtgggtaaattacccaccattcttcaaaggt-aatatagaaa 4149698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 5120172 - 5120136
Alignment:
Q  9 aagaatggtggataattta-ctcaaccaataaacatt 44  Q
    ||||||||||||||||||| |||||||||||||||||    
T  5120172 aagaatggtggataatttacctcaaccaataaacatt 5120136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0949 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0949
Description:

Target: scaffold0949; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2029 - 1981
Alignment:
Q  8 gaagaatggtggataatttact-caaccaataaacattaaccacataag 55  Q
    |||||||||||| ||||||||| ||||||||| |||||| |||||||||    
T  2029 gaagaatggtgggtaatttactccaaccaatacacattagccacataag 1981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 176814 - 176758
Alignment:
Q  8 gaagaatggtggataattta-ctcaaccaataaacattaaccacataagtgcatttt 63  Q
    |||||||||||| ||||||| | ||||||||| |||||| |||||||||| ||||||    
T  176814 gaagaatggtgggtaatttaccccaaccaatacacattagccacataagtacatttt 176758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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