View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_53 (Length: 261)

Name: NF4014_low_53
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_53
NF4014_low_53
[»] chr7 (1 HSPs)
chr7 (16-247)||(48574507-48574738)
[»] chr1 (1 HSPs)
chr1 (16-247)||(50298200-50298432)
[»] chr4 (1 HSPs)
chr4 (16-195)||(45149685-45149864)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 48574738 - 48574507
Alignment:
Q  16 accattgccaatccgacctgaaaacaaagttacatatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaaca 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48574738 accattgccaatccaacctgaaaacaaagttacatatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaaca 48574639  T
Q  116 aaatcactggacactgatttcgttgaagctctaaagtataatctttacaaaaatcacgttggcataccgtgatcctatcaaactaacagtcaatccaaac 215  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  48574638 aaatcactggacaccgatttctttgaagctctaaagtataatttttacaaaaatcaaggtggcataccgtgatcctatcaaactaacagtcaatccaaac 48574539  T
Q  216 atgtgtttaaagatttaaggagattggaactt 247  Q
    ||||||||||||||||||||||||||||||||    
T  48574538 atgtgtttaaagatttaaggagattggaactt 48574507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 50298200 - 50298432
Alignment:
Q  16 accattgccaatccgacctgaaaacaaagttacatatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaaca 115  Q
    |||||||||||||| ||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  50298200 accattgccaatccaacctgaaaacaaatttacttatttcatgttcacacaagaaaaataactaacttaatgcatgtttaaaatcacggagaatttaaca 50298299  T
Q  116 aaatcactg-gacactgatttcgttgaagctctaaagtataatctttacaaaaatcacgttggcataccgtgatcctatcaaactaacagtcaatccaaa 214  Q
    ||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  50298300 aaatcaccgtgacactgatttcgttgaagctctaaagtatactttttacaaaaatcacggtggcataccgtgattctatcaaactaacagtcaatccaaa 50298399  T
Q  215 catgtgtttaaagatttaaggagattggaactt 247  Q
    |||||||||||||||||||||||||||||||||    
T  50298400 catgtgtttaaagatttaaggagattggaactt 50298432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 45149864 - 45149685
Alignment:
Q  16 accattgccaatccgacctgaaaacaaagttacatatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaaca 115  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45149864 accattgccaatccaacctgaaaacaaagttacatatttcacgttcacacaagacaaataactaacttaatgcatgtttgaaatcacggagaatttaaca 45149765  T
Q  116 aaatcactggacactgatttcgttgaagctctaaagtataatctttacaaaaatcacgttggcataccgtgatcctatca 195  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  45149764 aaatcactggacaccgatttcgttgaagctctaaagtataaattttacaaaaatcacggtggcataccgtgatcctatca 45149685  T

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