View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_55 (Length: 253)

Name: NF4014_low_55
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_55
NF4014_low_55
[»] chr3 (4 HSPs)
chr3 (3-246)||(47452128-47452371)
chr3 (1-235)||(11006188-11006428)
chr3 (1-235)||(11024763-11025003)
chr3 (1-220)||(11015766-11015991)
[»] chr8 (5 HSPs)
chr8 (4-127)||(15348477-15348603)
chr8 (3-75)||(12194915-12194987)
chr8 (3-87)||(12199921-12200005)
chr8 (3-75)||(12439343-12439415)
chr8 (3-87)||(12444349-12444433)
[»] chr4 (24 HSPs)
chr4 (3-103)||(7771018-7771118)
chr4 (6-109)||(7904649-7904752)
chr4 (1-75)||(7822581-7822655)
chr4 (6-124)||(48156770-48156888)
chr4 (5-97)||(45372427-45372519)
chr4 (1-96)||(7765233-7765328)
chr4 (1-72)||(7813092-7813163)
chr4 (3-106)||(7907939-7908042)
chr4 (1-75)||(7800249-7800323)
chr4 (6-112)||(7877337-7877443)
chr4 (3-103)||(7789703-7789803)
chr4 (1-109)||(48891021-48891129)
chr4 (3-116)||(49044580-49044693)
chr4 (1-96)||(7786055-7786150)
chr4 (3-139)||(48170911-48171053)
chr4 (3-127)||(48735649-48735779)
chr4 (5-75)||(50251200-50251270)
chr4 (3-96)||(7238091-7238184)
chr4 (5-70)||(45366618-45366683)
chr4 (5-105)||(48862857-48862960)
chr4 (5-70)||(49048996-49049061)
chr4 (1-139)||(33134148-33134292)
chr4 (9-112)||(7774184-7774287)
chr4 (3-106)||(49041499-49041602)
[»] chr5 (2 HSPs)
chr5 (14-137)||(29687676-29687802)
chr5 (11-70)||(29712866-29712925)
[»] chr1 (2 HSPs)
chr1 (11-105)||(24309799-24309893)
chr1 (5-87)||(24322078-24322160)
[»] scaffold0508 (1 HSPs)
scaffold0508 (17-105)||(11890-11978)
[»] chr6 (1 HSPs)
chr6 (1-132)||(21015388-21015519)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 47452371 - 47452128
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaact 47452272  T
Q  103 taccgccacacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatttagaagcgtcgcttaatgatgatagtgcctctact 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  47452271 taccgccgcacacactcgtagaattgtgtttataacatcaacccttgacgttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctact 47452172  T
Q  203 tcaccgaaccttaattttttgcttccccaatctgagtataatct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47452171 tcaccgaaccttaattttttgcttccccaatctgagtataatct 47452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 11006428 - 11006188
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaa 100  Q
    ||||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  ||||||||||||||||||  ||||||||| | ||||||||     
T  11006428 gttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcattttgac 11006329  T
Q  101 cttaccgc---cacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaatagatttagaagcgtcgcttaatgatgatagtg 194  Q
    ||| || |    |||||||||  |||||||||||| ||   |||  || | |||||  ||||||| |||||||| ||||| |||||||| ||||||  ||    
T  11006328 ctttccactagaacacacactaatagaattgtgttcatgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgatgattctg 11006229  T
Q  195 cctctacttcaccgaaccttaattttttgcttccccaatct 235  Q
    | |||||||||| |||| |||||||| | |||||| |||||    
T  11006228 cttctacttcactgaactttaattttatacttcccgaatct 11006188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 11025003 - 11024763
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaa 100  Q
    ||||||||| ||||||||||||||  |||| ||||| ||| ||| ||||||||||||  ||||||||||||||| |   ||||||||| | |||||||||    
T  11025003 gttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataactttgcaaaatcgcattttgaa 11024904  T
Q  101 cttacc---gccacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaatagatttagaagcgtcgcttaatgatgatagtg 194  Q
    ||| ||   || |||||||||  |||||||||||| ||   |||   | | || ||   |||||| |||||||| ||||| |||||||| ||||||  ||    
T  11024903 ctttcccctgcaacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccatagattttgaagcatcgcttaacgatgattctg 11024804  T
Q  195 cctctacttcaccgaaccttaattttttgcttccccaatct 235  Q
    | ||||||||||  |||||||||||| |||||||| |||||    
T  11024803 cttctacttcacttaaccttaattttatgcttcccgaatct 11024763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 11015991 - 11015766
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaa 100  Q
    ||||||||| ||||||||||||||  |||| ||||| ||| ||| |||||||| |||  ||||||||||||||| |   ||||||||| | |||||||||    
T  11015991 gttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataactttgcaaaatcgcattttgaa 11015892  T
Q  101 ctt---accgccacacacactcgtagaattgtgtttat---aacatcaacccttgacgttcgatcaatagatttagaagcgtcgcttaatgatgatagtg 194  Q
    |||   || || |||||||||  |||||||||||| ||   |||   | | |||||   |||||| || ||||| |||||||||||||| ||||||  ||    
T  11015891 ctttccactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttgaagcgtcgcttaacgatgattctg 11015792  T
Q  195 cctctacttcaccgaaccttaatttt 220  Q
    | |||||||||| |||||||||||||    
T  11015791 cttctacttcactgaaccttaatttt 11015766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 15348477 - 15348603
Alignment:
Q  4 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaactt 103  Q
    |||||| ||||||||||||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||||||||   || |||||  |||||||| || ||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 15348576  T
Q  104 accgcc---acacacactcgtagaatt 127  Q
    ||||||   ||||||||||||||||||    
T  15348577 accgccgcaacacacactcgtagaatt 15348603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 12194915 - 12194987
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 75  Q
    ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||||||    
T  12194915 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatcc 12194987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 12199921 - 12200005
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 87  Q
    ||||||||||||||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  12199921 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 12200005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 12439343 - 12439415
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 75  Q
    ||||||||||||||||||||||| || | ||||| ||||||| |||||||||||| |||||||||||||||||    
T  12439343 tgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatcc 12439415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 12444349 - 12444433
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 87  Q
    ||||||||||||||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  12444349 tgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaaa 12444433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 7771018 - 7771118
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    ||||||||||||||||||||||| || | ||||| ||| ||| |||||| |||||||||||||||||||||||||  |||| |||  |||||||| ||||    
T  7771018 tgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctcactttgaaaattcacattttcaact 7771117  T
Q  103 t 103  Q
    |    
T  7771118 t 7771118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 7904649 - 7904752
Alignment:
Q  6 ggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 105  Q
    ||||||| |||||||||||| |||| ||||| ||  ||| ||||| ||||||||||||||||||||||||||  ||||||||  |||||||| |||| ||    
T  7904649 ggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaactcac 7904748  T
Q  106 cgcc 109  Q
    ||||    
T  7904749 cgcc 7904752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7822581 - 7822655
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 75  Q
    |||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||||||||||||||    
T  7822581 gttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatcc 7822655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 48156888 - 48156770
Alignment:
Q  6 ggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 105  Q
    |||| ||||||||||||||| |||| ||||||||| ||| |||||| ||||||||||||||||| ||| |||  ||||||||  | |||||| || ||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattac 48156789  T
Q  106 cgccacacacactcgtaga 124  Q
    ||| | |||| ||||||||    
T  48156788 cgcaaaacactctcgtaga 48156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 45372519 - 45372427
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacatttt 97  Q
    ||||||||||||||||||||| |||| ||||| ||  ||| |||||| ||||||||| |||||||||||||||  ||||||||  ||||||||    
T  45372519 aggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcctcattttgcaaattcacatttt 45372427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7765233 - 7765328
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattt 96  Q
    ||||||||| ||||||||||||||  ||   ||||||||||||| ||||| |||||||||| |||||||||||||||  ||||||||  |||||||    
T  7765233 gttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacattt 7765328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7813092 - 7813163
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctga 72  Q
    |||||||||||||||||||| |||| |||| ||||||||  ||| ||| |||||||||||||||||||||||    
T  7813092 gttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctga 7813163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 7907939 - 7908042
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    |||||||||||||||||||||||  ||| |||||||   ||  |||||||||||||||||||||||||| ||| |  ||||||||  |||||||| ||||    
T  7907939 tgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaact 7908038  T
Q  103 tacc 106  Q
    ||||    
T  7908039 tacc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7800249 - 7800323
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 75  Q
    |||||||||||||||||||| |||| |||| ||||||||  ||| ||| ||||||||||||||| ||||||||||    
T  7800249 gttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatcc 7800323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 7877337 - 7877443
Alignment:
Q  6 ggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 105  Q
    |||||| ||||||||||||| |||| ||||| ||||||| ||||  ||||||||||||||||||||||||    ||||||||  |||||||| |||| ||    
T  7877337 ggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcac 7877436  T
Q  106 cgccaca 112  Q
    | |||||    
T  7877437 caccaca 7877443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 7789703 - 7789803
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    ||||||||||||||||||||||| || | ||||| ||| ||| |||||| ||||||||| ||||||| |||||||  |||| |||  |||||||| ||||    
T  7789703 tgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaact 7789802  T
Q  103 t 103  Q
    |    
T  7789803 t 7789803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 48891021 - 48891129
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaa 100  Q
    |||||||||  |||| ||||||||| |||| ||||| ||| ||| |||||| |||||||||||| |||| |||||||  ||||||||  | |||||| ||    
T  48891021 gttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaa 48891120  T
Q  101 cttaccgcc 109  Q
    |||||||||    
T  48891121 cttaccgcc 48891129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 49044693 - 49044580
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    |||||||||| |||| ||||||| |||| ||||||||  ||| ||||| ||||||||||||||||||| |  | |  ||||||||  ||||||||||| |    
T  49044693 tgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttgaaat 49044594  T
Q  103 taccgccacacaca 116  Q
    |||||  |||||||    
T  49044593 taccgtgacacaca 49044580  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7786055 - 7786150
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattt 96  Q
    |||||||||||||||||| |||||| ||   ||||| ||| ||| ||||  |||| ||||| ||||||||||||||| |||||||||  |||||||    
T  7786055 gttgaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacattt 7786150  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 48171053 - 48170911
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tgatcctctatttgcaaaaacacattttga 99  Q
    |||||||  |||||||||||||| |||| ||||| ||  ||| |||||| |||||| ||||||||||   ||||||||  ||||||||  | |||||| |    
T  48171053 tgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaattcgcattttca 48170954  T
Q  100 acttaccgcc---acacacactcgtagaattgtgtttataaca 139  Q
    | ||||||||   ||||||||||||| |||| |||| ||||||    
T  48170953 aattaccgcctaaacacacactcgtaaaattatgttcataaca 48170911  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 48735779 - 48735649
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tgatcctctatttgcaaaaacacattttga 99  Q
    ||||||| ||||||||||||||| | || ||||| ||  ||| |||||| |||||||||||||||||   |||| ||   ||||||||  ||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtgatactgattttgcaaattcacattttga 48735680  T
Q  100 acttaccgcc---acacacactcgtagaatt 127  Q
    | ||||||||   || |||||||||||||||    
T  48735679 aattaccgccataacccacactcgtagaatt 48735649  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 50251270 - 50251200
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcc 75  Q
    |||||||| |||||| ||||| |||  || |||||  |||||||||| |||||||||||||||||||||||    
T  50251270 aggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctgatcc 50251200  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 7238184 - 7238091
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattt 96  Q
    |||||||||| |||||||||||| |  | ||||| ||  ||| |||||| |||||||||||||||||||| ||||  ||||||||  |||||||    
T  7238184 tgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacattt 7238091  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 45366683 - 45366618
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 70  Q
    ||||| || |||||||||||| |||| ||||||||| ||| |||||  ||||||||||||||||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctct 45366618  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 48862857 - 48862960
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tgatcctctatttgcaaaaacacattttgaac 101  Q
    ||||| ||||||||||||||| | || ||||| ||| |||  ||||| |||||||||||||||||   ||||||||  ||||||||  |||||||| |||    
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaac 48862956  T
Q  102 ttac 105  Q
    ||||    
T  48862957 ttac 48862960  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 70  Q
    ||||||| ||||| ||||||| |||| ||||||||  ||| ||||| |||||||||||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 33134292 - 33134148
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctc---tgatcctctatttgcaaaaacacatttt 97  Q
    |||||| || ||||||||||||||| | || ||||| ||| ||| |||| | || ||||||||||||||   ||||||||  ||||||||  ||||||||    
T  33134292 gttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacatttt 33134193  T
Q  98 gaacttaccgcc---acacacactcgtagaattgtgtttataaca 139  Q
     || | ||||||   ||||||||| ||| ||||||||| ||||||    
T  33134192 caaataaccgcctcaacacacactagtaaaattgtgttcataaca 33134148  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 7774287 - 7774184
Alignment:
Q  9 tgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttaccgc 108  Q
    ||||||||||||||||| | |  ||||| ||  ||| ||||  |||||||||||||||||||||||| |  ||||||||  |||||||| |||| ||| |    
T  7774287 tgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccac 7774188  T
Q  109 caca 112  Q
    ||||    
T  7774187 caca 7774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 49041602 - 49041499
Alignment:
Q  3 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaact 102  Q
    |||| ||||| |||||||||||| |  | ||||| ||| |||  ||||| ||||||||||||||||||||||| |  ||||||||  | |||||| ||||    
T  49041602 tgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaact 49041503  T
Q  103 tacc 106  Q
    ||||    
T  49041502 tacc 49041499  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 29687676 - 29687802
Alignment:
Q  14 gtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttaccgcca--- 110  Q
    |||||||||||| |||||||||||||  ||| |||||| ||||||||||| || ||| | ||||  ||||||||  | |||||| ||||||||||||       
T  29687676 gtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttaccgccaatg 29687775  T
Q  111 cacacactcgtagaattgtgtttataa 137  Q
    ||||||||| ||||||| |||| ||||    
T  29687776 cacacactcctagaattctgttcataa 29687802  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  11 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctct 70  Q
    ||||||||||||||| | || ||||||||| ||| ||||| |||||||||||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 24309799 - 24309893
Alignment:
Q  11 ccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 105  Q
    ||||| ||||||||| | || ||||| | | ||| ||||| |||||||||||||||||||||| |||  ||||||||  |||||||| |||||||    
T  24309799 ccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttac 24309893  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 24322078 - 24322160
Alignment:
Q  5 aggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaa 87  Q
    ||||||| ||||||||||||| | || ||||| ||| ||| |||||| |||||||||||||||||  ||||||  ||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaa 24322160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 11890 - 11978
Alignment:
Q  17 aagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaacttac 105  Q
    ||||||||| | || ||||| | | ||| ||||||||||||||||||||||||||||  ||  ||||||||  |||||||| |||||||    
T  11890 aagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaacttac 11978  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21015388 - 21015519
Alignment:
Q  1 gttgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctatttgcaaaaacacattttgaa 100  Q
    ||||||||| ||||| | ||||||| |||| ||||||||  ||| ||||| || |||||||||||||||| |  | |  |||||||   |||||||||||    
T  21015388 gttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaa 21015487  T
Q  101 cttaccgccacacacactcgtagaattgtgtt 132  Q
     |||| ||| |||||| || ||||||| ||||    
T  21015488 attactgccgcacacaatcctagaattttgtt 21015519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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