View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_56 (Length: 251)
Name: NF4014_low_56
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 104 - 250
Target Start/End: Original strand, 29462487 - 29462629
Alignment:
| Q |
104 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccagatgtacgtgtcttcttttcttcccttttatttggtgtatc |
203 |
Q |
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| T |
29462487 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccaga----cgtgtcttcttttctttccttttatttggtgtatc |
29462582 |
T |
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| Q |
204 |
acttgctctataattgcgaggatcctgcgacacttgttatacgcaat |
250 |
Q |
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| T |
29462583 |
acttgctctataattgcgaggatcctgcaacacttgttatacgcaat |
29462629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 29461898 - 29461987
Alignment:
| Q |
18 |
gtgtgtcagtttaagagttgacctgtgactagctaaagaaagaatcttggtatgaattgttttgtttccattcattgtttgagatcctca |
107 |
Q |
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| T |
29461898 |
gtgtgtcagtttaagagttgacctgtgactagctaaagaaagaatcttggtatgaattgttttgtttccattcattgtttgagatcctca |
29461987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 29454488 - 29454546
Alignment:
| Q |
192 |
atttggtgtatcacttgctctataattgcgaggatcctgcgacacttgttatacgcaat |
250 |
Q |
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| T |
29454488 |
atttggtgtatcacttggtctgtaattgctaggatcctgcggcacctgctataagcaat |
29454546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 9363454 - 9363367
Alignment:
| Q |
104 |
ctcagagccagaatagaatattgaagatgaagaaaaaagaaattgaagatcggataccagatgtacgtgtcttcttttcttcccttttatttggt |
198 |
Q |
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| T |
9363454 |
ctcaaagccagaatagaatatggtagatgaagaaaaaggaaattgaag-------accagatgtacatgtcttcttttctttccttttatttggt |
9363367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 9295291 - 9295337
Alignment:
| Q |
51 |
taaagaaagaatcttggtatgaattgttttgtttccattcattgttt |
97 |
Q |
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| T |
9295291 |
taaagaaagaattttggtatgaattgctttttttccattcattgttt |
9295337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 9061803 - 9061854
Alignment:
| Q |
51 |
taaagaaagaatcttggtatgaattg-ttttgtttccattcattgtttgagat |
102 |
Q |
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| T |
9061803 |
taaagaacgaattttggtatgaattgcttttgttt-cattcattgtttgagat |
9061854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 9068672 - 9068723
Alignment:
| Q |
51 |
taaagaaagaatcttggtatgaattgttttgtttccattcattgtttgagatc |
103 |
Q |
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| T |
9068672 |
taaagaaagaattttggtatgaattgcttt-ttttcattcattctttgagatc |
9068723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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