View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4014_low_57 (Length: 250)
Name: NF4014_low_57
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_57 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 37348133 - 37347887
Alignment:
| Q |
4 |
ggaggagcagagaagggaatttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagg |
103 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37348133 |
ggaggagaagagaagggagtttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagg |
37348034 |
T |
|
| Q |
104 |
gtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgctttagcaggtatatattc |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37348033 |
gtctaactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgctttagcaggtatatattc |
37347934 |
T |
|
| Q |
204 |
tacatcatcttaatcatttatgctttgtacaaaatctacatttctct |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37347933 |
tacatcatcttaaccatttatgctttgtacaaaatctacatttctct |
37347887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 37290232 - 37290295
Alignment:
| Q |
132 |
gcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgctttagcaggt |
195 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37290232 |
gcttttggctattatgggtccatctggctctggaaaatccacacttcttgatgctttagcaggt |
37290295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 37315410 - 37315527
Alignment:
| Q |
79 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
178 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||||||||| ||||| | ||| || ||||| || |||||||||||||| ||||| || |||||||| | |
|
|
| T |
37315410 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37315509 |
T |
|
| Q |
179 |
ttgatgctttagcaggta |
196 |
Q |
| |
|
||||| | |||||||||| |
|
|
| T |
37315510 |
ttgatacattagcaggta |
37315527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 37326963 - 37327080
Alignment:
| Q |
79 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
178 |
Q |
| |
|
|||| |||||||||||||||||| || | ||||||||||| ||||| | ||| || ||||| || |||||||||||||| ||||| || |||||||| | |
|
|
| T |
37326963 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37327062 |
T |
|
| Q |
179 |
ttgatgctttagcaggta |
196 |
Q |
| |
|
||||| | |||||||||| |
|
|
| T |
37327063 |
ttgatacattagcaggta |
37327080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 29476610 - 29476668
Alignment:
| Q |
137 |
tggctattatgggtccttctggttgtggaaaatctacacttcttgatgctttagcaggt |
195 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
29476610 |
tggctattatgggtccatctggttctggaaaatctactcttcttgatgctttggcaggt |
29476668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 19554367 - 19554250
Alignment:
| Q |
79 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
178 |
Q |
| |
|
|||| ||||| |||||||||||| || || || ||||||| || |||| ||| |||||||| || ||||| |||||||| ||||| || |||||||| | |
|
|
| T |
19554367 |
aatggaagcagatcaattcttcacggactaacaggttatgttaagccaggtcaacttttggccataatgggcccttctggctgtggcaagtctacactac |
19554268 |
T |
|
| Q |
179 |
ttgatgctttagcaggta |
196 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
19554267 |
ttgatactttagcaggta |
19554250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 37297436 - 37297500
Alignment:
| Q |
131 |
agcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgctttagcaggt |
195 |
Q |
| |
|
|||||||||| | ||||||||||| || ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
37297436 |
agcttttggcagtaatgggtccttcaggctgtggcaaatccacactccttgatgctttagcaggt |
37297500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University