View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_58 (Length: 250)
Name: NF4014_low_58
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3018262 - 3018505
Alignment:
| Q |
1 |
aatctcataaacattctataaacccctctaagaaagagtttcatattttcaaagaattttgcacaaacattta-------gttggcacgtcaattaatga |
93 |
Q |
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| T |
3018262 |
aatctcataaacattctataaacccctctaagaaagagtttcatattttcaaagaattttgcacatacatttaattatatgttgtcacgtcaattaatga |
3018361 |
T |
|
| Q |
94 |
atataaaaatatatgagttgttttattcaataattaatatagttgatctaaaacaatcatttttcttgttgctatttcaggaagttattggttattgaac |
193 |
Q |
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| T |
3018362 |
atataaaaatatatgaattgttttattcaataattaatatagttgatctaaaacaatcatttttcttgttgctatttcaggaagttattgattattaaac |
3018461 |
T |
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| Q |
194 |
cctttctatattgacgatcaattaatacaccggtttgtagacct |
237 |
Q |
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| T |
3018462 |
tctttctatattgacgattgattaatacaccgatttgtagacct |
3018505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 30546442 - 30546489
Alignment:
| Q |
83 |
tcaattaatgaatataaaaatatatgagttgttttattcaataattaa |
130 |
Q |
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| T |
30546442 |
tcaattaatgaatatgaaaatacatgagttgtcttattcactaattaa |
30546489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 32585827 - 32585878
Alignment:
| Q |
82 |
gtcaattaatgaatataaaaatatatgagttgttttattcaataattaatat |
133 |
Q |
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| T |
32585827 |
gtcaattaattaatataaaaacatatgagttgctatattcaataattgatat |
32585878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 44411172 - 44411218
Alignment:
| Q |
85 |
aattaatgaatataaaaatatatgagttgttttattcaataattaat |
131 |
Q |
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| T |
44411172 |
aattaatgaatataaaaacacatgagttgttgtattcattaattaat |
44411218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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