View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_6 (Length: 568)
Name: NF4014_low_6
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 236 - 520
Target Start/End: Complemental strand, 42210247 - 42209952
Alignment:
| Q |
236 |
aaaggtgacgtattagttagtttatagagaaaggtgaaaatagataatcatctcttgaaaataaaatttcaaaaacaa-----------cacaacttaaa |
324 |
Q |
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| T |
42210247 |
aaaggtgacgtattagttagtttattgagaaaggtgaaaatagataatcatctcttgaaaataaaatttcaaaaacaatactgatgatacacaacttaaa |
42210148 |
T |
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| Q |
325 |
tatgtgtgtgattgtgtttaatgaatataagttgttaaaacacattgatcatcaaattaattaaccatgattttaaagtgtccaaatatatatgatatta |
424 |
Q |
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| T |
42210147 |
tatgtgtgtgattgtgtttaatgaatataagttgttaaaacacattgatcatcaaattaattaaccatgattttaaagtgtccaaatatatatgatatta |
42210048 |
T |
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| Q |
425 |
ctaagtactaccaactaaacatccaaattgtgttcaattatacacaattttttccggtgttcaaatgtatattacatctatatctatatttgtatc |
520 |
Q |
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| T |
42210047 |
ctaagtactaccaactaaacatccaaattgtgttcaattatacacaattttttccggtgttcaaatgtatattacatctatatctatatttgtatc |
42209952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 42210669 - 42210425
Alignment:
| Q |
11 |
cacagaacgtcggttttctttttctattctgtctccaaataaggataaaagaaaatgcaacacacaatcgacaagt-----aactaatttgactccttta |
105 |
Q |
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| T |
42210669 |
cacagaacgtcggttttctttttctattctgtctccaaataaggataaaagaaaatgcaacacacaatcgacaagttaagtaactaatttgactccttta |
42210570 |
T |
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| Q |
106 |
aagtgaatacatgttaaagcggaaaaactagcagtcatatttgaacgcatcaatcaattattatttgttaggtgcatataatatcaatcattgatttctt |
205 |
Q |
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| T |
42210569 |
aagtgaatacatgttaaagcggaaaaactagtagtcatatttgaaggcatcaatcaattattatttgttaggtgtatataatatcaatcattgatttctt |
42210470 |
T |
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| Q |
206 |
gatcaagagatcgtaacttagtttataggaaaaggtgacgtatta |
250 |
Q |
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| T |
42210469 |
gatcaagagatcgtaacttagtttatagtaaaaggtgacgcatta |
42210425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 552
Target Start/End: Complemental strand, 42209908 - 42209876
Alignment:
| Q |
520 |
ccatgcacttaaagattagtcacatgattaaac |
552 |
Q |
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| T |
42209908 |
ccatgcacttaaaaattagtcacatgattaaac |
42209876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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