View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_62 (Length: 248)

Name: NF4014_low_62
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_62
NF4014_low_62
[»] chr3 (5 HSPs)
chr3 (137-232)||(27697773-27697868)
chr3 (141-232)||(27747086-27747177)
chr3 (21-137)||(27701788-27701898)
chr3 (141-222)||(27727486-27727567)
chr3 (141-210)||(27714249-27714318)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 27697868 - 27697773
Alignment:
Q  137 tcgcgggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccatagtcttgtgt 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  27697868 tcgcgggcaatggaaggacaagtaacagggataacattgacatttcctagacgaatacatgctatttcagtgttcaattcttccattttcttgtgt 27697773  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 27747086 - 27747177
Alignment:
Q  141 gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccatagtcttgtgt 232  Q
    ||||||||| |||||| |||||||| ||||||| ||||||||||||||| ||||| |||| ||||||||||||||| |||||  ||||||||    
T  27747086 gggcaatggtgggacaggtaacaggaataacatggacatttcctaggcggatacacgctacttcagtgttcaattcttccattatcttgtgt 27747177  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 27701898 - 27701788
Alignment:
Q  21 ctttgtgcgaacaaagtgggaccttttctttgaccaacgaaaggggataagtgagtattatggtgtttaaggttgagaaatcactcggaatattttttcg 120  Q
    ||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||      | ||||||||| ||||| |||||| ||||||||| |     
T  27701898 ctttgtgtgaacgaagtgggaccttttctttgactaacgaaagggaataagtgagta------tctttaaggtttagaaaccactcgaaatatttttgct 27701805  T
Q  121 aagtaaggatagattat 137  Q
    ||| |||||||||||||    
T  27701804 aagcaaggatagattat 27701788  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 27727486 - 27727567
Alignment:
Q  141 gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgttcaattcctccat 222  Q
    ||||||||| |||||| |||||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| ||| |||||    
T  27727486 gggcaatggtgggacaggtaacaggaataacatggacatttcctaggcggatacacgctatttcggtgttcatttcttccat 27727567  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 27714249 - 27714318
Alignment:
Q  141 gggcaatggagggacaagtaacagggataacattgacatttcctaggcgaatacatgctatttcagtgtt 210  Q
    ||||||| | |||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||    
T  27714249 gggcaattgtgggataagtaacggggataacatggacatttcctaggcggatacatgctatttctgtgtt 27714318  T

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