View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_63 (Length: 247)
Name: NF4014_low_63
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_63 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 37547118 - 37546890
Alignment:
| Q |
19 |
attgagccattgtaactccaccgacaaaagaaagtgcacatgcatgccagttactaaggcgatgttgagtgttttccaacaaatgatcatataactcctt |
118 |
Q |
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| T |
37547118 |
attgagccattgcaactccaccgacaaaagaaagtgcacatgcatgccagttactaaggcgatgttgagtgttttccaacaaatgatcatataactcctt |
37547019 |
T |
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| Q |
119 |
ttcccccctcatataaacagggaacactgagttatttccctaaatcttgagttagccgaaaccattcatcctactcaactccaaggcccgctgtgaacan |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37547018 |
ttcccccctcatataaacagggaacactgagttatttccctaaatcttgagttagccgaaaccattcatcctactcaactccgaggcccgctgtgaacat |
37546919 |
T |
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| Q |
219 |
nnnnnngagatcaagagtatttaagcatc |
247 |
Q |
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| T |
37546918 |
ttttttgagatcaagagtatttaagcatc |
37546890 |
T |
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