View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_66 (Length: 242)

Name: NF4014_low_66
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_66
NF4014_low_66
[»] chr1 (12 HSPs)
chr1 (4-242)||(5934487-5934725)
chr1 (155-242)||(5936183-5936270)
chr1 (37-83)||(28832164-28832210)
chr1 (37-81)||(32560997-32561041)
chr1 (42-81)||(14880852-14880891)
chr1 (47-81)||(7803429-7803463)
chr1 (37-81)||(2994782-2994826)
chr1 (35-83)||(12268975-12269023)
chr1 (37-81)||(16580792-16580836)
chr1 (41-81)||(22335382-22335422)
chr1 (37-81)||(34632193-34632237)
chr1 (37-81)||(36467018-36467062)
[»] chr7 (5 HSPs)
chr7 (37-85)||(16971016-16971064)
chr7 (37-81)||(21136855-21136898)
chr7 (37-83)||(47663376-47663422)
chr7 (37-81)||(41029296-41029340)
chr7 (48-84)||(41250051-41250087)
[»] chr6 (4 HSPs)
chr6 (37-81)||(5604610-5604654)
chr6 (37-81)||(14049877-14049921)
chr6 (37-81)||(20744162-20744206)
chr6 (47-83)||(34701169-34701205)
[»] chr5 (4 HSPs)
chr5 (37-81)||(19647501-19647545)
chr5 (35-83)||(12218276-12218324)
chr5 (34-74)||(24408526-24408566)
chr5 (45-81)||(40446007-40446043)
[»] chr4 (7 HSPs)
chr4 (37-81)||(22630353-22630397)
chr4 (37-81)||(37930840-37930884)
chr4 (37-79)||(6610289-6610331)
chr4 (37-112)||(19479470-19479544)
chr4 (47-83)||(42344621-42344657)
chr4 (37-81)||(43034335-43034379)
chr4 (41-81)||(48067157-48067197)
[»] chr2 (4 HSPs)
chr2 (47-113)||(690781-690846)
chr2 (37-80)||(12303604-12303647)
chr2 (37-83)||(11790327-11790373)
chr2 (37-81)||(4138015-4138059)
[»] scaffold0314 (2 HSPs)
scaffold0314 (34-81)||(863-910)
scaffold0314 (34-81)||(4372-4419)
[»] chr3 (5 HSPs)
chr3 (47-81)||(1456543-1456577)
chr3 (37-74)||(38798891-38798928)
chr3 (37-81)||(8075809-8075853)
chr3 (37-81)||(25727960-25728004)
chr3 (47-83)||(28430568-28430604)
[»] scaffold0334 (1 HSPs)
scaffold0334 (37-112)||(5176-5250)
[»] chr8 (4 HSPs)
chr8 (40-81)||(34461783-34461824)
chr8 (39-113)||(7204862-7204935)
chr8 (37-81)||(27571842-27571886)
chr8 (37-81)||(32944833-32944877)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 5934725 - 5934487
Alignment:
Q  4 ataggtaattttgggtatatatcnnnnnnngtagtggtcgggatttgaacctcagaccttgcaaatattatacattgttctactaacagtgagctaaact 103  Q
    |||||||||||| ||||||||||       ||||||| || | ||||||||||||||| | ||||||||||||||||| | ||||||||||| |||||||    
T  5934725 ataggtaatttttggtatatatctttttttgtagtggccgaggtttgaacctcagaccatacaaatattatacattgtcccactaacagtgaactaaact 5934626  T
Q  104 cacaaggactatgagtctatatctaatctaataaaactaaaacttggacgcgatcattactactaattcttggactctaaccatgctaagacataatcaa 203  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5934625 cacaaggactttgggtctatatctaatctaataaaactaaaacttggacgcgatcattactactaattcttggactctaaccatgctaagacataatcaa 5934526  T
Q  204 caacagaatcaatctcttccctgctgatttttccatcac 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5934525 caacagaatcaatctcttccctgctgatttttccatcac 5934487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 5936270 - 5936183
Alignment:
Q  155 gatcattactactaattcttggactctaaccatgctaagacataatcaacaacagaatcaatctcttccctgctgatttttccatcac 242  Q
    |||| ||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||| || ||||| ||||||||||||||||    
T  5936270 gatctttactactaattcttagactctaaccaaactaagacataatcaacaacaaaatcaatttcatccctactgatttttccatcac 5936183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 28832164 - 28832210
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 83  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28832164 gtggtcgggatttgaacctcagaccttgcatatattatgcattgttc 28832210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 32561041 - 32560997
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||    
T  32561041 gtggtcgggatttgaaccccggaccttgcatatattatacattgt 32560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 14880891 - 14880852
Alignment:
Q  42 cgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  14880891 cgggatttgaacctcagaccttgcatatattatgcattgt 14880852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 7803463 - 7803429
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||||| ||||||||||||||    
T  7803463 tttgaacctcagaccttgcatatattatacattgt 7803429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2994826 - 2994782
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||    
T  2994826 gtggtcggggtttgaaccccggaccttgcatatattatacattgt 2994782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 12268975 - 12269023
Alignment:
Q  35 tagtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 83  Q
    ||||||||||| |||||||| | ||||||||| ||||||| ||||||||    
T  12268975 tagtggtcggggtttgaaccccggaccttgcatatattatgcattgttc 12269023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 16580792 - 16580836
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  16580792 gtggttgggattcgaaccccagaccttgcatatattatacattgt 16580836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 22335422 - 22335382
Alignment:
Q  41 tcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||| |||||||||||||||||||| ||||||| ||||||    
T  22335422 tcggggtttgaacctcagaccttgcatatattatgcattgt 22335382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 34632237 - 34632193
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||| ||||||||||||||| || |||||| ||||||||||||||    
T  34632237 gtggccgggatttgaacctcggatcttgcatatattatacattgt 34632193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 36467018 - 36467062
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||||||||||||| | |||||||| ||||||| ||||||    
T  36467018 gtggtcgggatttgaaccttataccttgcatatattatgcattgt 36467062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 16971064 - 16971016
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttcta 85  Q
    ||||||||| |||||| |||||||||| || ||||||||||||||||||    
T  16971064 gtggtcggggtttgaatctcagaccttacatatattatacattgttcta 16971016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 21136898 - 21136855
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  21136898 gtggtcgggatttgaacctca-accttgcatatattatacattgt 21136855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 47663376 - 47663422
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 83  Q
    ||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  47663376 gtggtcggggtttgaacttcagaccttgtatatattatacattgttc 47663422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 41029340 - 41029296
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||| ||||| | ||||||||| ||||||||||||||    
T  41029340 gtggtcgggattcgaaccccggaccttgcatatattatacattgt 41029296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 41250051 - 41250087
Alignment:
Q  48 ttgaacctcagaccttgcaaatattatacattgttct 84  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  41250051 ttgaacctcggaccttgcatatattatacattgttct 41250087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 5604610 - 5604654
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||    
T  5604610 gtggtcgggatttgaacctcagactatgcatatattatacattgt 5604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 14049877 - 14049921
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||| ||| ||||||||||||||||||||| ||||||| ||||||    
T  14049877 gtggccggaatttgaacctcagaccttgcatatattatgcattgt 14049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 20744206 - 20744162
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgt 20744162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 34701205 - 34701169
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgttc 83  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  34701205 tttgaacctcagaccttgcatatattatgcattgttc 34701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 19647501 - 19647545
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||| |||||||| || ||||||||||||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgt 19647545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 12218276 - 12218324
Alignment:
Q  35 tagtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 83  Q
    |||||||||||||||||||  ||||||||||| || |||| ||||||||    
T  12218276 tagtggtcgggatttgaactccagaccttgcatattttatgcattgttc 12218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 24408566 - 24408526
Alignment:
Q  34 gtagtggtcgggatttgaacctcagaccttgcaaatattat 74  Q
    |||||||||||| |||||||| ||||||||||| |||||||    
T  24408566 gtagtggtcggggtttgaaccccagaccttgcatatattat 24408526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 40446043 - 40446007
Alignment:
Q  45 gatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  40446043 gatttgaacctcagaccttgcatatattatgcattgt 40446007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 22630353 - 22630397
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  22630353 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 22630397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 37930840 - 37930884
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  37930840 gtggtcggggtttgaacctcagaccttgcatatattatgcattgt 37930884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 6610331 - 6610289
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacatt 79  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||    
T  6610331 gtggtcggggtttgaaccccagaccttgcatatattatacatt 6610289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 19479470 - 19479544
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc-tactaacagtgagctaaactcacaaggac 112  Q
    ||||||||| |||||||| | ||||||||| ||||||| |||||||| || ||||  |||||||| |||||||||||    
T  19479470 gtggtcggggtttgaaccccggaccttgcatatattatgcattgttcatattaac--tgagctaagctcacaaggac 19479544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 42344621 - 42344657
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgttc 83  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  42344621 tttgaacctcggaccttgcatatattatacattgttc 42344657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 43034335 - 43034379
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||| |||| |||||||||||||||||||| ||||||| ||||||    
T  43034335 gtggccggggtttgaacctcagaccttgcatatattatgcattgt 43034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 48067197 - 48067157
Alignment:
Q  41 tcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||  ||||||| ||||||||||||||    
T  48067197 tcgggatttgaacctcatgccttgcatatattatacattgt 48067157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 690846 - 690781
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgt-tctactaacagtgagctaaactcacaaggact 113  Q
    |||||||||||||| ||||| |||||||||||||| ||| | |||  |||||||||||||||||||||    
T  690846 tttgaacctcagacgttgcatatattatacattgtctcttccaac--tgagctaaactcacaaggact 690781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 12303647 - 12303604
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattg 80  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||    
T  12303647 gtggtcgggatttgaacttcaaaccttgcatatattatacattg 12303604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11790327 - 11790373
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc 83  Q
    ||||||||||||||||||||| |||||| | ||||||| ||||||||    
T  11790327 gtggtcgggatttgaacctcataccttgtatatattatccattgttc 11790373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 4138059 - 4138015
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||    
T  4138059 gtggtcggggtttgaatctcggaccttgcatatattatacattgt 4138015  T

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Target: scaffold0314 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 863 - 910
Alignment:
Q  34 gtagtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  863 gtagtggtcgggatttcaacctcagaccttgcatatactatagattgt 910  T

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Target: scaffold0314; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 4372 - 4419
Alignment:
Q  34 gtagtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||| |||||||||||||||| ||| |||| |||||    
T  4372 gtagtggtcgggatttcaacctcagaccttgcatatactatagattgt 4419  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 1456543 - 1456577
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||||| ||||||||||||||    
T  1456543 tttgaacctcagaccttgcatatattatacattgt 1456577  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 38798928 - 38798891
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattat 74  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  38798928 gtggtcgggatttgaacctcggaccttgcatatattat 38798891  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8075853 - 8075809
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||| |||| |||||||||||||||||||| ||||||| ||||||    
T  8075853 gtggccggggtttgaacctcagaccttgcatatattatgcattgt 8075809  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25727960 - 25728004
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||| | ||||||||| ||||||| ||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgt 25728004  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 28430568 - 28430604
Alignment:
Q  47 tttgaacctcagaccttgcaaatattatacattgttc 83  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  28430568 tttgaacctcagaccttgcatatattatgcattgttc 28430604  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 5250 - 5176
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgttc-tactaacagtgagctaaactcacaaggac 112  Q
    ||||| ||| |||||||||||||||||||| ||||||| |||||| | ||| |  | ||||||||||||||||||||    
T  5250 gtggttggggtttgaacctcagaccttgcatatattatgcattgtccatacca--attgagctaaactcacaaggac 5176  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 34461783 - 34461824
Alignment:
Q  40 gtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  34461783 gtcgggatttgaaccgcagaccttacatatattatacattgt 34461824  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 7204935 - 7204862
Alignment:
Q  39 ggtcgggatttgaacctcagaccttgcaaatattatacattgtt-ctactaacagtgagctaaactcacaaggact 113  Q
    ||||| |||||||| || | |||||||| ||||||||||||||| ||||||||  |||| |||||| |||||||||    
T  7204935 ggtcgagatttgaatcttaaaccttgcatatattatacattgttcctactaac--tgagataaacttacaaggact 7204862  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 27571842 - 27571886
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    |||||||||||||||||| || |||||||| ||||||| ||||||    
T  27571842 gtggtcgggatttgaaccccaaaccttgcatatattatgcattgt 27571886  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 32944833 - 32944877
Alignment:
Q  37 gtggtcgggatttgaacctcagaccttgcaaatattatacattgt 81  Q
    ||||||||| |||||||||||||||||||| || |||| ||||||    
T  32944833 gtggtcggggtttgaacctcagaccttgcatattttatgcattgt 32944877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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