View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_68 (Length: 241)
Name: NF4014_low_68
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 54709886 - 54709682
Alignment:
| Q |
23 |
cttagtatattaaaataaagaggaatattattatgaacactctctctaacattcacttttctattataagaaactcacgtaggtttcatgctatagaaat |
122 |
Q |
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| T |
54709886 |
cttagtatattaaaataaagaggaatattattatgaacactctctctaacattaacttttctatcataagaaactcacgtaggtttcatgctatagaaat |
54709787 |
T |
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| Q |
123 |
agatc-cagctgaaatggtgagattcacatgaattttacgaaataaaagagcgaatgttagagagtgtgttcttaacatttctccattataaataaggaa |
221 |
Q |
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| T |
54709786 |
agatctcagttgaaatggtgagattcacatgaattttacgaaataaaatagcaaatgttagagagtgtgttcttaacatttctccattataaataaggaa |
54709687 |
T |
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| Q |
222 |
atata |
226 |
Q |
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||||| |
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| T |
54709686 |
atata |
54709682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 1719139 - 1719093
Alignment:
| Q |
137 |
tggtgagattcacatgaattttacgaaataaaagagcgaatgttaga |
183 |
Q |
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| T |
1719139 |
tggtgagattcacatgagttttacccaataaaagagcgaatattaga |
1719093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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