View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4014_low_70 (Length: 239)
Name: NF4014_low_70
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_70 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3018139 - 3017910
Alignment:
| Q |
1 |
caatttagcagcaagcatgtaatagcgtcaagtgtgatatcacattttttgtcttgttactcttgtactattacctcttcaattattcacttattaggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018139 |
caatttagcagcaagcatgtaatagcgtcaagtgtgatatcacattttttgtcttgttactcttgtactattacctcttcaattattcacttattaggaa |
3018040 |
T |
|
| Q |
101 |
atcattttctctt------------------atcattcataattttttaaggaaacccacgtgtatatccctatctatttttgtggaaaatactaataaa |
182 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3018039 |
atcattttctcttatcacttcttcccataatatcattcataattttttaaggaaacccacgtgtatatccctatctatttttatggaaaatactaataaa |
3017940 |
T |
|
| Q |
183 |
tctcttggtacacata--cttagaaaaata |
210 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
3017939 |
tctcttggtacacatacccttagaaaaata |
3017910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 3046033 - 3045970
Alignment:
| Q |
49 |
ttgtcttgttactcttgtactattacctcttcaattattcacttattaggaaatcattttctctt |
113 |
Q |
| |
|
|||||||||||||||||| ||| | |||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
3046033 |
ttgtcttgttactcttgttctaccaactctccaattattca-ttattagggaatcattttctctt |
3045970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University