View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_76 (Length: 233)
Name: NF4014_low_76
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 9352321 - 9352518
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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| T |
9352321 |
catgtggtgcctgcatgatttcc-tttaaatatggtaagcttgttacatgttttcccaacattgtgaatatgtgaatgatactgcatgtgatattctgca |
9352419 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctcc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9352420 |
agatgcttatgatattgaaatgagtttgaggttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctcc |
9352518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 9305812 - 9306000
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
9305812 |
atttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattttgcaagatgcttatgatattg |
9305911 |
T |
|
| Q |
135 |
aaatgagtatgaggttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctccctatgct |
223 |
Q |
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| T |
9305912 |
aaatgagtttgaggttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctccctatgct |
9306000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 9302176 - 9302326
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302176 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgt-----caacattgtgaatatgtgaatgatattgcatgtgatattctgca |
9302270 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
173 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
9302271 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
9302326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 9332597 - 9332805
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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||||||||||||| | ||||||| ||| ||||| |||| |||||| |||||||||||| ||||||||||||||||||| ||| ||||||| |||| |||| |
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| T |
9332597 |
catgtggtgcctgtatgatttccttttgaatatagtaaccttgttagatgttttcccagcattgtgaatatgtgaatggtatcgcatgtggtattatgca |
9332696 |
T |
|
| Q |
118 |
agatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgtttt-----------cagttagaaaacctcattagtcatcaatta |
206 |
Q |
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|||||| ||||||||| |||||| | |||| | ||||||||||||||||||||||| || || | ||||||||||||||||||||||||| |
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| T |
9332697 |
agatgc-tatgatattaaaatgaatttgagatgcatgatgaatatagctggcatgtcttcctagtgttggcaatcagaaaacctcattagtcatcaatta |
9332795 |
T |
|
| Q |
207 |
gcttgcctcc |
216 |
Q |
| |
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|||||||||| |
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| T |
9332796 |
gcttgcctcc |
9332805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 9297949 - 9298089
Alignment:
| Q |
33 |
ggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatat |
132 |
Q |
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|||||||||||| ||||||||||||||||| ||||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||| |
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| T |
9297949 |
ggatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatatattaatgatactgcatgtgttattctgcaagatgcttatgatat |
9298048 |
T |
|
| Q |
133 |
tgaaatgagtatgaggttcatgatgaatatagctggcatgt |
173 |
Q |
| |
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| |||||||| |||| | ||||||||||||||||| ||||| |
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| T |
9298049 |
taaaatgagtttgagatgcatgatgaatatagctgccatgt |
9298089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 9367296 - 9367149
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| || |||||| |
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| T |
9367296 |
catgtggtgcctgcatgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttaatctgca |
9367197 |
T |
|
| Q |
118 |
agatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
173 |
Q |
| |
|
|||||||| |||||||| |||||| || |||||||||||||||||||| |
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| T |
9367196 |
--------atgatattaaaatgagtttgaggtgcacgatgaatatagctggcatgt |
9367149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 9309672 - 9309552
Alignment:
| Q |
18 |
catgtggtgcctgca-ggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
9309672 |
catgtggtgcctgcatggatttccctttgaatatggtaagcttgtcatacctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgc |
9309573 |
T |
|
| Q |
117 |
aagatgcttatgatattgaaat |
138 |
Q |
| |
|
||||||| | |||||||||||| |
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| T |
9309572 |
aagatgc-tctgatattgaaat |
9309552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 9293326 - 9293487
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccc-tttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
| |
|
|||||||||||| || || || || ||| ||||||||||||||||| ||||| |||||||||||||| | | ||||| | |||||||| |||||||| |
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| T |
9293326 |
catgtggtgcctacatgaattgccatttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgagactgcatgtgttattctgc |
9293425 |
T |
|
| Q |
117 |
aagatgcttatga-tattgaaatgagtatgaggttcatgatgaatatagctggcatgttttca |
178 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||| |||| |
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|
| T |
9293426 |
tagatgct-atgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttca |
9293487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 9373223 - 9373067
Alignment:
| Q |
18 |
catgtggtgcctgcagga-tttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
| |
|
|||||||||||| || || ||| ||||| ||||||||||||||||| ||||| |||||||||||||| | | ||||||| |||||||| |||||||| |
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| T |
9373223 |
catgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgttattctgc |
9373124 |
T |
|
| Q |
117 |
aagatgcttatg-atattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
173 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||| | ||||||||||||||||||||||| |
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|
| T |
9373123 |
aagatgc-catgaatattaaaatgagtttgagatgcatgatgaatatagctggcatgt |
9373067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 9288834 - 9288961
Alignment:
| Q |
46 |
aatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatg-atattgaaatgagtat |
144 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||| | | ||||||| |||||||| ||||||||||||||| |||| |||||||||||||| | |
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| T |
9288834 |
aatatggtaagcttgttacatgttagtccaacattgagaatttattaatgatactgcatgtgttattctgcaagatgc-tatgaatattgaaatgagttt |
9288932 |
T |
|
| Q |
145 |
gaggttcatgatgaatatagctggcatgt |
173 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
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| T |
9288933 |
gagatgcatgatgaatatagctggcatgt |
9288961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 9348690 - 9348588
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
| |
|
|||||| ||| ||||||||||| |||| || | | ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
9348690 |
atttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaagatgc-tatgatattg |
9348592 |
T |
|
| Q |
135 |
aaat |
138 |
Q |
| |
|
|||| |
|
|
| T |
9348591 |
aaat |
9348588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 9356060 - 9355958
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
| |
|
|||||| ||| ||||||||||| |||| || | | ||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||| |
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|
| T |
9356060 |
atttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaagatgc-tctgatattg |
9355962 |
T |
|
| Q |
135 |
aaat |
138 |
Q |
| |
|
|||| |
|
|
| T |
9355961 |
aaat |
9355958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 9367131 - 9367095
Alignment:
| Q |
180 |
ttagaaaacctcattagtcatcaattagcttgcctcc |
216 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
9367131 |
ttagaaaacctcattagtcaccaattagcttgcctcc |
9367095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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