View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_77 (Length: 233)
Name: NF4014_low_77
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 11453296 - 11453427
Alignment:
| Q |
83 |
tttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgtgaga |
182 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
11453296 |
tttctctaatgaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtagtgaataccgttttataaggttaagattgtgaga |
11453395 |
T |
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| Q |
183 |
gaaattagggaaattgtggtgcaagattagag |
214 |
Q |
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| T |
11453396 |
gaagttagggaaattgtggtgcaagattagag |
11453427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 11381061 - 11381180
Alignment:
| Q |
79 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11381061 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11381160 |
T |
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| Q |
179 |
gagagaaattagggaaattg |
198 |
Q |
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| T |
11381161 |
gagagaaattagggaaattg |
11381180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 11404461 - 11404577
Alignment:
| Q |
79 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11404461 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11404560 |
T |
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| Q |
179 |
gagagaaattagggaaa |
195 |
Q |
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| T |
11404561 |
gagagaaattagggaaa |
11404577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 11396439 - 11396559
Alignment:
| Q |
79 |
agtatttctctaataaaacaatattagagaaaatacgaacaagaatgaatgtggtgaattggtttgagtggggaataccgttttataaggttaagattgt |
178 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
11396439 |
agtatttctctaataaaacaatattagagaaaatactaacaagaatgaatgtggtgaattggtttgagtggggaatgccgttttataaggttacgattgt |
11396538 |
T |
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| Q |
179 |
gagagaaattagggaaattgt |
199 |
Q |
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|||| || ||||||||||||| |
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| T |
11396539 |
gagaaaagttagggaaattgt |
11396559 |
T |
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