View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4014_low_8 (Length: 548)
Name: NF4014_low_8
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4014_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 29138346 - 29137828
Alignment:
| Q |
19 |
tattccttccaccggacgagcatagccgttttccataggacagtcactctcagtcctacaaaagaatagtggtttagcaagtctgcggcttggagcatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29138346 |
tattccttccaccggacgagcatagccgttttccataggacagtcactctcagtcctacaaaagaacagtggtttagcaagtctgcggcttggagcatca |
29138247 |
T |
|
| Q |
119 |
ccttcactatgatatccggcacacctaagattcaacataacaaacattagataaaagaatggctgaaataaattgtaacgtgtcaatcaaaatcatcttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29138246 |
ccttcactatgatatccggcacacctaagattcaacataacaaacattagataaaagaatggctgaaataaattgtaacgtgtcaatcaaaatcatcttg |
29138147 |
T |
|
| Q |
219 |
atttagcagctaaccatggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29138146 |
atttagcagctaaccatggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagc |
29138047 |
T |
|
| Q |
319 |
ttcgcattcagcatactccacagcatcctgtaggttcacagtgaataatgtaaagaaacaattttgaatagattattggttatattaatcatcccaannn |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29138046 |
ttcgcattcagcatactccacagcatcctgtaggttcacagtgaataatgtaaataaacaattttgaatagattattggttatattaataatcccaa-tt |
29137948 |
T |
|
| Q |
419 |
nnnnaatctgtccaaacatgtgtttctttccaaatctattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaa |
518 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29137947 |
ttttaatctgtccaaacatgtgtttctttccaaatccattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaa |
29137848 |
T |
|
| Q |
519 |
gtaatcactttgcccctatg |
538 |
Q |
| |
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|||||||||||||||||||| |
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| T |
29137847 |
gtaatcactttgcccctatg |
29137828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 14296308 - 14296193
Alignment:
| Q |
20 |
attccttccaccggacgagcatagccgttttccataggacagtcactctcagtcctacaaaagaatagtggtttagcaagtctgcggcttggagcatcac |
119 |
Q |
| |
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|||||||| || |||||||||||||| ||||||||||| ||||| || ||| | |||||||| | ||||||||||||||| |||||| ||||||||||| |
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| T |
14296308 |
attccttcaacaggacgagcatagccattttccatagggcagtcgctttcacttctacaaaatattagtggtttagcaagcctgcggtttggagcatcag |
14296209 |
T |
|
| Q |
120 |
cttcactatgatatcc |
135 |
Q |
| |
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||||||| |||||||| |
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| T |
14296208 |
cttcactgtgatatcc |
14296193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 14296176 - 14296070
Alignment:
| Q |
242 |
accatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacag |
341 |
Q |
| |
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||||| |||||||||||||| ||||| ||||| ||||||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||||||| | |
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| T |
14296176 |
accattacaagatccatatcctcaatccctctcctcttcatagcttctcgaaatggagggaagtccttcacaacagcttcacattcggcatactccatgg |
14296077 |
T |
|
| Q |
342 |
catcctg |
348 |
Q |
| |
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||||||| |
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| T |
14296076 |
catcctg |
14296070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 34613091 - 34612985
Alignment:
| Q |
38 |
gcatagccgttttccataggacagtcactctcagtcctacaaaagaatagtggtttagcaagtctgcggcttggagcatcaccttcactatgatatccgg |
137 |
Q |
| |
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||||| || ||||||||||| ||||| ||||||| | |||||| || ||||||||||||||||| || | ||||||||| ||||||||||||| ||| |
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| T |
34613091 |
gcataaccattttccatagggcagtcgctctcagatcgacaaaataagagtggtttagcaagtcttcgaccaggagcatcagcttcactatgataaccga |
34612992 |
T |
|
| Q |
138 |
cacacct |
144 |
Q |
| |
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||||||| |
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|
| T |
34612991 |
cacacct |
34612985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 347
Target Start/End: Complemental strand, 34612878 - 34612762
Alignment:
| Q |
231 |
accatggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagc |
330 |
Q |
| |
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|||| ||||| ||||| ||||||||||| |||||||| || ||||||||||| |||||| ||| || ||||| || |||||||| |||||||| || |
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| T |
34612878 |
accagggatcaaccattacaagatccatgtcttcaataccccttttcttcatagcctctataaaagggggaaaacttttaacaacagcctcgcattctgc |
34612779 |
T |
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| Q |
331 |
atactccacagcatcct |
347 |
Q |
| |
|
||| ||| ||||||||| |
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|
| T |
34612778 |
atattcctcagcatcct |
34612762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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