View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4014_low_80 (Length: 226)

Name: NF4014_low_80
Description: NF4014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4014_low_80
NF4014_low_80
[»] scaffold0006 (6 HSPs)
scaffold0006 (1-208)||(218921-219128)
scaffold0006 (27-208)||(110081-110262)
scaffold0006 (32-208)||(168330-168506)
scaffold0006 (34-199)||(145082-145247)
scaffold0006 (32-208)||(140001-140177)
scaffold0006 (5-208)||(57146-57349)
[»] scaffold0012 (2 HSPs)
scaffold0012 (36-208)||(115930-116102)
scaffold0012 (1-208)||(108113-108320)
[»] chr1 (15 HSPs)
chr1 (5-208)||(20368612-20368814)
chr1 (32-208)||(13670716-13670892)
chr1 (36-208)||(20477684-20477856)
chr1 (32-208)||(13684962-13685138)
chr1 (34-199)||(13655321-13655486)
chr1 (35-201)||(19138033-19138199)
chr1 (32-208)||(13506450-13506626)
chr1 (32-201)||(13610525-13610694)
chr1 (1-208)||(13543556-13543763)
chr1 (35-208)||(13650240-13650413)
chr1 (33-208)||(15898925-15899100)
chr1 (32-146)||(13513694-13513808)
chr1 (58-209)||(13421057-13421208)
chr1 (123-208)||(16468318-16468403)
chr1 (39-100)||(16496877-16496938)
[»] scaffold0406 (1 HSPs)
scaffold0406 (3-208)||(7522-7727)
[»] scaffold0068 (1 HSPs)
scaffold0068 (35-208)||(40719-40892)
[»] scaffold0069 (1 HSPs)
scaffold0069 (36-208)||(26710-26882)
[»] chr2 (1 HSPs)
chr2 (32-208)||(38057569-38057745)
[»] chr6 (2 HSPs)
chr6 (50-208)||(22283794-22283952)
chr6 (32-208)||(21814599-21814775)
[»] chr8 (1 HSPs)
chr8 (36-208)||(20814537-20814709)


Alignment Details
Target: scaffold0006 (Bit Score: 168; Significance: 3e-90; HSPs: 6)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 219128 - 218921
Alignment:
Q  1 atagatactccaagtttggacacaatttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaactt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||    
T  219128 atagatactccaagtttagacacaatttcaattgtacatttattagattttgaaaactaagaattccttgaggatctgcactccatatctttttcaactt 219029  T
Q  101 caacagtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaa 200  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  219028 caacagtccatatagagtaacctctttcaattgtgacataacctcttcactattattttcattcaaattcaattcaaatatctcttcaactaaatcacaa 218929  T
Q  201 tttctaac 208  Q
    ||||||||    
T  218928 tttctaac 218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 110262 - 110081
Alignment:
Q  27 ttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||| ||| ||||||||||||||    
T  110262 ttcaattgtacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcaacttcaacagtccatctagagtaacctctt 110163  T
Q  127 tcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  110162 tcaattgtgtcataacctcttcactgttattttgattgaaagtcaattcaaatatctcttcaactaaagcacaatttttaac 110081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 168506 - 168330
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  168506 ttgtacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttcaacttcaacagtccatctagagtaacctctttcaat 168407  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  168406 tgtgtcataacctcttcgctgttattttcattcaaattcaattcaaatatctcttcaactaaatcacaatttctaac 168330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 145247 - 145082
Alignment:
Q  34 gtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattg 133  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |||||| ||| || ||||||||||||||||||    
T  145247 gtacatatattagattttgaaaactaagaattccttgaggatctccactccatatctttttcaacttgaacagtccatctatagtaacctctttcaattg 145148  T
Q  134 tgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcaca 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  145147 tgtcataacctcttcactgttattttcattgaaattcaattcgaatatctcttcaactaaagcaca 145082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 140177 - 140001
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| ||| || |||||| ||||||||     
T  140177 ttgtacatttattagatttcgaaaactaagaattccttcaggatctccactccatatctttttcagcttcaacagtccatctatagtaacttctttcaaa 140078  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||| |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  140077 tgtgtcgtaacctctacactgttatttttattgaaagtcaattcaaatatctcttcaactaaagcacaatttctaac 140001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 57349 - 57146
Alignment:
Q  5 atactccaagtttggacacaatttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaac 104  Q
    |||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||| |||||||  ||  ||    
T  57349 atactccaagtttgaacaatgtttcaattgtacatttattagattttgaaaactaagaattccatcaggatttctattccatatctttttcagatttgac 57250  T
Q  105 agtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttc 204  Q
    | | |||  | |||||| |||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||     
T  57249 aatccatcaatagtaacttctttcaaatgtgtcttaacctcttcactgttgttttcattgaaattcaattcaaatatctcttcaactaaagcacattttg 57150  T
Q  205 taac 208  Q
    ||||    
T  57149 taac 57146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 116102 - 115930
Alignment:
Q  36 acatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtg 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  116102 acatttattagattttgaaaactaagaattccttcaggatctccactacatatatttttcaacttcaacagtacttgtagagtaacctctttcaattgtg 116003  T
Q  136 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  116002 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaatcacaatttctaac 115930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 108320 - 108113
Alignment:
Q  1 atagatactccaagtttggacacaatttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaactt 100  Q
    |||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||    
T  108320 atagatactccaagtttgcacaatattccaattgtacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttcaactt 108221  T
Q  101 caacagtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaa 200  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||    
T  108220 gaacagtacatctagagtaacctctttcaattgtgtcataacctcttcactgttattttcattgaaagtcaattcaaatatctcttcaactaaatcacaa 108121  T
Q  201 tttctaac 208  Q
    ||||||||    
T  108120 tttctaac 108113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 20368814 - 20368612
Alignment:
Q  5 atactccaagtttggacacaatttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaac 104  Q
    |||||||||| ||| |||   |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||| |    
T  20368814 atactccaagcttgcacaatgtttcaattgtacatttattagattttgaaaactaagaattccttgaggatctccactccat-tatttttcaacttcatc 20368716  T
Q  105 agtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttc 204  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20368715 agttcatctagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttc 20368616  T
Q  205 taac 208  Q
    ||||    
T  20368615 taac 20368612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13670892 - 13670716
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  13670892 ttgtacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttcaacttcaacagtccatctagagtaacctctttcaat 13670793  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13670792 tgtgtcataacctcttcgctgttattttcattcaaattcaattcaaatatctcttcaactaaatcacaatttctaac 13670716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 20477856 - 20477684
Alignment:
Q  36 acatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtg 135  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |||||| ||  |||||||||||||||||||||||    
T  20477856 acatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcaacttgaacagtccacttagagtaacctctttcaattgtg 20477757  T
Q  136 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20477756 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 20477684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13685138 - 13684962
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| ||| || |||||| ||||||||     
T  13685138 ttgtacatatattagattttgaaaactaagaattccttcaggatctccactccatatctttttcagcttcaacagtccatctatagtaacttctttcaaa 13685039  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13685038 tgtgtcgtaacctcatcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttgtaac 13684962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 13655486 - 13655321
Alignment:
Q  34 gtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattg 133  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||| |||||| ||| || ||||||||||||||||||    
T  13655486 gtacatatattagattttgaaaactaagaattccttgaggatctccactccatatctttttcaacttgaacagtccatctatagtaacctctttcaattg 13655387  T
Q  134 tgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcaca 199  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  13655386 tgtcataacctcttcactgttattttcattgaaattcaattcgaatatctcttcaactaaagcaca 13655321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 19138033 - 19138199
Alignment:
Q  35 tacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgt 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||| ||| || |||||||||||||||||||    
T  19138033 tacatttattagattttgaaaactaagaattccttgaggatctctactccatatctttttcagcttcaacagtccatctatagtaacctctttcaattgt 19138132  T
Q  135 gtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaat 201  Q
    ||| |||||||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||||    
T  19138133 gtcgtaacctcttcactgtttttctcattcaaattcaattcaaatatctctttaactaaatcacaat 19138199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13506626 - 13506450
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| ||| || |||||| ||||||||     
T  13506626 ttgtacatttattagatttcgaaaactaagaattccttcaggatctccactccatatctttttcagcttcaacagtccatctatagtaacttctttcaaa 13506527  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||| |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  13506526 tgtgtcgtaacctctacactgttatttttattgaaagtcaattcaaatatctcttcaactaaagcacaatttctaac 13506450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 13610694 - 13610525
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||  ||||||| |||||||||| ||| || |||||| ||||||||     
T  13610694 ttgtacatttattagatttcgaaaactaagaattccttcaggatctccactccatacctttttcagcttcaacagtccatctatagtaacttctttcaaa 13610595  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaat 201  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  13610594 tgtgtcgtaacctcttcactgttattttcattgaaattcaattcaaatatctcttcaactaaatcacaat 13610525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13543763 - 13543556
Alignment:
Q  1 atagatactccaagtttggacacaatttc-aattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaact 99  Q
    |||||||||||||| ||| ||| | |||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||| |||||||       
T  13543763 atagatactccaagcttgtaca-actttctaattgtacatttattaaattttgaaaactaagaattccttgaggatctccactccatatctttttcagtc 13543665  T
Q  100 tcaacagtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcaca 199  Q
    |||||||| ||| || |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||    
T  13543664 tcaacagtccatctatagtaacctctttcaattgtgtcgtaacctcttcactgtttttttcattcaaattccattcaaatatctcttcaactgaaacaca 13543565  T
Q  200 atttctaac 208  Q
    |||| ||||    
T  13543564 atttgtaac 13543556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 13650413 - 13650240
Alignment:
Q  35 tacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgt 134  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||||||  ||| ||| | ||| || |||||| |||||||| |||    
T  13650413 tacatttattagattttgaaaactaagaatttcttccggatctccactccatatctttttcagattccacaatccatctatagtaacttctttcaaatgt 13650314  T
Q  135 gtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  13650313 gttgtaacctcttcactgttattttcattgaaagtcaattcaaatatctcttcaactaaagcacaatttgtaac 13650240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 15898925 - 15899100
Alignment:
Q  33 tgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaatt 132  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||| || |||| |||| ||| | ||  || | ||| ||||||||| |    
T  15898925 tgtatatttattagattttgaaaactaagaattccttgaggatctccactccatatcttgttcagcttccacaatccaattataataagctctttcaaat 15899024  T
Q  133 gtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||   |  ||||| |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||    
T  15899025 gtgatgtttcctctacactgttattttcattcaaagtcagttcaaatatttcttcaactgaagcacaatttctaac 15899100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 13513808 - 13513694
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||  ||||||| |||||||||| ||| || |||||| ||||||||     
T  13513808 ttgtacatttattagatttcgaaaactaagaattccttcaggatctccactccataactttttcagcttcaacagtccatctatagtaacttctttcaaa 13513709  T
Q  132 tgtgtcataacctct 146  Q
    |||||| ||||||||    
T  13513708 tgtgtcgtaacctct 13513694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 13421208 - 13421057
Alignment:
Q  58 taagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtgtcataacctcttcactgttatt 157  Q
    |||||||||||| |||||||| ||| ||||| ||||||| |||| ||| |     || |||||| |||||||| |||||   ||| ||||| ||||||||    
T  13421208 taagaattccttgaggatctccactccatatctttttcagcttcgacaatcttcctatagtaacttctttcaaatgtgttgcaacatcttcgctgttatt 13421109  T
Q  158 ttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaact 209  Q
    |||||| ||| |||| ||||||||||||||||||| ||||||||||||||||    
T  13421108 ttcattgaaagtcaactcaaatatctcttcaactagagcacaatttctaact 13421057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 16468318 - 16468403
Alignment:
Q  123 tctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||||||||||   || ||||| ||||| ||||| |||| ||| ||||||||||||||||||| || |||||||||||| ||||    
T  16468318 tctttcaattgtgatgtatcctctacactggtatttccattgaaagtcaattcaaatatctcttccacaaaagcacaatttgtaac 16468403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 16496877 - 16496938
Alignment:
Q  39 tttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaactt 100  Q
    ||||| ||||||| |||| |||||||| ||| |||||||||||| ||||| |||||||||||    
T  16496877 tttatgagattttcaaaattaagaatttcttgaggatctctactccatatctttttcaactt 16496938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 7522 - 7727
Alignment:
Q  3 agatactccaagtttggacacaatttcaattgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttca 102  Q
    |||||||||||| ||| ||||   |||||||||||||||||||||||||||||||||||||| |||| |||||||  ||| ||||| ||||||||||| |    
T  7522 agatactccaagcttgcacaccccttcaattgtacatttattagattttgaaaactaagaatcccttgaggatcttcactccatatctttttcaacttga 7621  T
Q  103 acagtacatatagagtaacctctttcaattgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatt 202  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
T  7622 acagtacatccagagtaacctctttcaattgtgtcataacctcttccctgttattttgattgaaagtcaattcaaatatctcttcaactaaagcacaatt 7721  T
Q  203 tctaac 208  Q
    | ||||    
T  7722 tttaac 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 40719 - 40892
Alignment:
Q  35 tacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgt 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||  ||||||||| ||| ||||||||||||||||||||||    
T  40719 tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcagtttcaacagtccatctagagtaacctctttcaattgt 40818  T
Q  135 gtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  40819 gtcataacctcttcactgttattttcattcaaattcaattcaaatatctgttcaactaaatcacaatttgtaac 40892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 26882 - 26710
Alignment:
Q  36 acatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtg 135  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||| ||| ||| | ||| || |||||| |||||||| ||||    
T  26882 acatttattagattttgaaaactaagaattccttccggatctccactccatatctttttcaaattccacaatccatctatagtaacttctttcaaatgtg 26783  T
Q  136 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||    
T  26782 ttgtaacctcttcactgttattttcattgaaagtcaattcaaatatctcttcaactaaagcacaatttgtaac 26710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 38057569 - 38057745
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| | ||| | ||| || |||||| ||||||||     
T  38057569 ttgtacatttattagattttgaaaactaagaattccttcaggatctccactccatatctttttcaactcccacaatccatttaaagtaacttctttcaaa 38057668  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    ||||   || | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38057669 tgtgatgtatcatcttcattgttattttcattcaaagtcaattcaaatatctcttcaactaaagcacaatttctaac 38057745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 22283794 - 22283952
Alignment:
Q  50 ttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtgtcataacctcttca 149  Q
    |||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||| | ||| || ||||||||||||||| |||||  || ||||||||    
T  22283794 ttgaaaactaagaattccttcaagatctccactccatatctttttcaacttcaacaatccatctatagtaacctctttcaaatgtgttgtagcctcttca 22283893  T
Q  150 ctgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  22283894 ctgttattttcattgaaattcaattcaaatatctcttcaactaaagcacaatttgtaac 22283952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 21814775 - 21814599
Alignment:
Q  32 ttgtacatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaat 131  Q
    ||||||| |||| |||||||||||||||||||| |||| |||||||  ||| ||||| |||| ||| ||| ||| | ||| || |||||| ||||||||     
T  21814775 ttgtacagttataagattttgaaaactaagaatcccttgaggatcttcactccatatcttttgcaaattccacaatccatctatagtaacttctttcaaa 21814676  T
Q  132 tgtgtcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |||||  || ||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| ||||    
T  21814675 tgtgttgtatcctctacactgttattttcattgaaagtcaattcaaatatctcttcaactgaattacaatttgtaac 21814599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 20814537 - 20814709
Alignment:
Q  36 acatttattagattttgaaaactaagaattccttcaggatctctactacatatatttttcaacttcaacagtacatatagagtaacctctttcaattgtg 135  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||| ||| ||| | ||| || |||||| |||||||| ||||    
T  20814537 acatttattagattttgaaaactaagaattccttccggatctccactccatatctttttcaaattccacaatccatctatagtaacttctttcaaatgtg 20814636  T
Q  136 tcataacctcttcactgttattttcattcaaattcaattcaaatatctcttcaactaaagcacaatttctaac 208  Q
    |  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| ||||    
T  20814637 ttgtaacctcttcactgttattttcattgaaagtcaattcaaatatctcttcaactgaatcacaatttgtaac 20814709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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