View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4015_high_11 (Length: 357)
Name: NF4015_high_11
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 342
Target Start/End: Complemental strand, 50747807 - 50747500
Alignment:
| Q |
35 |
gggtaagaattgtatttagataaaacagtcgttttatcctttaattgtgggaagaattataatattacgtatcaaaataaaataaaacatagtatttaaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50747807 |
gggtaagaattgtatttagataaaacagtcgttttatcctttaattgtgggaagatttataatattacgtatcaaaataaaataaaacatagtatttaaa |
50747708 |
T |
|
| Q |
135 |
tatgnnnnnnnnnnnnnnnnnnnnnnngaacatgtatttcattagtcgatttaatctatgaagttattgaaaaattgttaatggccacttaaaatgtgtt |
234 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50747707 |
tatgtttttttagttagtttagtttttgaatatgtatttcattagtcgatttaatctataaagttattgaaaaattgttaatggacacttaaaatgtgtt |
50747608 |
T |
|
| Q |
235 |
tttattttgatgttttgagtactactcatccgcccctttttataatcattagatatgttaagaaaaaacagtcatgaaattaatattcatgctttatact |
334 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50747607 |
tctattttgatgttttgagtactactcatccgcccctttttataagcactagatatgttaagaaaaaacagtcatgaaattaatattcatgttttatact |
50747508 |
T |
|
| Q |
335 |
atataatt |
342 |
Q |
| |
|
|||||||| |
|
|
| T |
50747507 |
atataatt |
50747500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University