View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4015_high_18 (Length: 255)
Name: NF4015_high_18
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_high_18 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 27434007 - 27433796
Alignment:
| Q |
43 |
tctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtc |
142 |
Q |
| |
|
|||||||| ||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27434007 |
tctaacacggaaaaattaaactacacaacttcaataagttt--attcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtc |
27433910 |
T |
|
| Q |
143 |
cctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctg-acaattttcatatcttagataaattaatcgttaactcattataatag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27433909 |
cctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttagataaattaatcgttaactcattataatag |
27433810 |
T |
|
| Q |
242 |
agagactaatttgt |
255 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27433809 |
agagactaatttgt |
27433796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 27442593 - 27442823
Alignment:
| Q |
16 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
27442593 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacaacttcaataagttt--attcaacttcatggacaaaaataatttata |
27442690 |
T |
|
| Q |
116 |
gaagatcaatggagaccaaattttgtccctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgacaattttcatatcttagata |
215 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||||||| |||| |
|
|
| T |
27442691 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgata |
27442790 |
T |
|
| Q |
216 |
aattaatcgttaactcattataatagagagact |
248 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |
|
|
| T |
27442791 |
aattaattggtaactcattgtaatagagagact |
27442823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 27434138 - 27434039
Alignment:
| Q |
31 |
taataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttatagaagatcaatggaga |
130 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |||||||| || ||||||||||| || ||| ||||| ||||| ||||||| |||||| |
|
|
| T |
27434138 |
taataccaaaagtctaacacggaaaaattaaattacacaacttcaata--aattcattcaacttcacgggcaacaataaattataaaagatcattggaga |
27434041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University