View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_high_2 (Length: 665)
Name: NF4015_high_2
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 36943011 - 36942918
Alignment:
| Q |
42 |
atattaccaatctatccacctgtggaatcaaaccacaaggaatctcacagatttcacatcccaattcacttttaccataaattcacagaataga |
135 |
Q |
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| T |
36943011 |
atattaccaacctatccatctttggaacaaaatcacaaacaatctcacagatttcacatctcatttcacatttacaatagattcacagaataga |
36942918 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 36941059 - 36941017
Alignment:
| Q |
323 |
cattttttatgtcaaatatttttcatttgtttattccaattga |
365 |
Q |
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| T |
36941059 |
cattttttatgtcaaatatttttcatttgttcattcaaattga |
36941017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 12895743 - 12895803
Alignment:
| Q |
71 |
aaaccacaaggaatctcacagatttcacatcccaattcacttttaccataaattcacagaa |
131 |
Q |
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| T |
12895743 |
aaaccacaacaaatctcacaaatttcacattccatttcacttaaaccataaattcacagaa |
12895803 |
T |
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