View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_high_21 (Length: 247)
Name: NF4015_high_21
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33337074 - 33336846
Alignment:
| Q |
1 |
atgttcttattcacacttctaaccaattcttcagtaccatccttgttttttgaaaatttcagcttccacatctttatctagaaattttcttagctagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33337074 |
atgttcttattcacacttctaaccaattcttcagtaccatccttgttttttgaaaatttcagcttccacatctttatctagaaattttcttagctagata |
33336975 |
T |
|
| Q |
101 |
aatttaaaataatacaactgagtttagtgtttagtgtttagtttctgcatgtaatgtatgaagggggagtctggccatttattcacacaacacaagttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33336974 |
aatttaaaataatacaactgagtttagtgtttagtgtttagtttctgcatgtaatgtatgaagggggagtctggccttttattcacacaacacaagttag |
33336875 |
T |
|
| Q |
201 |
ggatgccaataattttatattgtgagttt |
229 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
33336874 |
ggatgccaataattttatattgtgagttt |
33336846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 35131057 - 35131177
Alignment:
| Q |
1 |
atgttcttattcacacttctaaccaattcttcagtaccatccttgttttttgaaaatttcagcttccacatctttatctagaaattttcttagctagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35131057 |
atgttcttattcacacttctaaccaattcttcagtaccatccttgttttttgaaaatttcagcttccacatctttatctagaaattttcttagctagata |
35131156 |
T |
|
| Q |
101 |
aatttaaaataatacaactga |
121 |
Q |
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||||||||||||||||||||| |
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| T |
35131157 |
aatttaaaataatacaactga |
35131177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 35131306 - 35131406
Alignment:
| Q |
129 |
gtttagtgtttagtttctgcatgtaatgtatgaagggggagtctggccatttattcacacaacacaagttagggatgccaataattttatattgtgagtt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35131306 |
gtttagtgtttagtttctgcatgtaatgtatgaagggggagtctggccttttattcacacaacacaagttagggatgccaataattttatattgtgagtt |
35131405 |
T |
|
| Q |
229 |
t |
229 |
Q |
| |
|
| |
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|
| T |
35131406 |
t |
35131406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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