View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4015_high_29 (Length: 215)
Name: NF4015_high_29
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 31936477 - 31936618
Alignment:
| Q |
60 |
ttatagaaatagaagtgtaactagtggaattcccatattgattttcatatccatcttcacaatgtttttagaaatcaaattaaatatgaatgcaatgctc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31936477 |
ttatagaaatagaagtgtaactagtggaattcccatattgattttcatatctatcttcacaatgtttttagaaatcaaattaaatatgaatgcaatgctc |
31936576 |
T |
|
| Q |
160 |
ttgtaatgttgtaatgtggtaaacacaagaggatgtcctatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31936577 |
ttgtaatgttgtaatgtggtaaacacaagaggatgtcctatg |
31936618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 31659846 - 31659771
Alignment:
| Q |
126 |
tttagaaatcaaattaaatatgaatgcaatgctcttgtaatgttgtaatgtggtaaacacaagaggatgtcctatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31659846 |
tttagaaatcaaattaaatatgaatgcaatgctcttgtaatgttgtaatgtggtaaacacaagaggatgtcctatg |
31659771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 31876574 - 31876692
Alignment:
| Q |
73 |
agtgtaactagtggaattcccatattgattttcatatccatcttcacaatgtttttagaaatcaaattaaatatgaatgcaatgctcttgtaatgttgta |
172 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| | | ||||| |
|
|
| T |
31876574 |
agtgtaactattggaattcccatgttgattttcatat---tcttcacaatgtttttaaaaatcaaatgaaatatgaatgcaatggt-------tcttgta |
31876663 |
T |
|
| Q |
173 |
atgtggtaaacacaagaggatgtcctatg |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
31876664 |
atgtggtaaacacaagaggatgtcttatg |
31876692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 31660006 - 31659965
Alignment:
| Q |
23 |
cccttttttaagctgaaaaacagtagaagaaatgaggttata |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31660006 |
cccttttttaagctgaaaaacagtagaagaaatgaggttata |
31659965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 31936379 - 31936420
Alignment:
| Q |
23 |
cccttttttaagctgaaaaacagtagaagaaatgaggttata |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31936379 |
cccttttttaagctgaaaaacagtagaagaaatgaggttata |
31936420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 885816 - 885775
Alignment:
| Q |
103 |
ttcatatccatcttcacaatgtttttagaaatcaaattaaat |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
885816 |
ttcatatccatcttcacaatgtttttagaaatcaaatgaaat |
885775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 89
Target Start/End: Complemental strand, 31659908 - 31659879
Alignment:
| Q |
60 |
ttatagaaatagaagtgtaactagtggaat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31659908 |
ttatagaaatagaagtgtaactagtggaat |
31659879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University