View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_1 (Length: 762)
Name: NF4015_low_1
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 8403590 - 8403091
Alignment:
| Q |
18 |
caacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatg |
117 |
Q |
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| T |
8403590 |
caacaagctcttctgaaaacaacatttttgttttgatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatg |
8403491 |
T |
|
| Q |
118 |
ttgaacgtttgaggtgaaactcttacttaacacatgttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
8403490 |
ttgaacgtttgaggtgaaactcttacttaacacatgttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgctt |
8403391 |
T |
|
| Q |
218 |
gatgaatatatattacaatgcttgatcaattttggccacctagatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattct |
317 |
Q |
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| T |
8403390 |
gatgaatatatataacaatgcttgatcaattttggccacctagatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattct |
8403291 |
T |
|
| Q |
318 |
ccatgatatgaacaaaaatgatgtatcctctaattaac--aaaaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaat |
415 |
Q |
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| T |
8403290 |
ccatgatatgaac-aaaatgatgtatcccctaattaacaaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaat |
8403192 |
T |
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| Q |
416 |
agcggcatggttcaaacatagttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagca |
515 |
Q |
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| T |
8403191 |
agcggcatggttcaaacatagttctaaaatgataatgttgacgataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagca |
8403092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 575 - 750
Target Start/End: Complemental strand, 8402635 - 8402461
Alignment:
| Q |
575 |
tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa |
674 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8402635 |
tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggtt-aaa |
8402537 |
T |
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| Q |
675 |
atgagtttatcacaggttctttaaccaagaatgcaatatcatggatcttctattcactcattgactcggttagaat |
750 |
Q |
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| T |
8402536 |
atgagtttatcacaggttctttaaccaagaatgcaatatcatggctcttctattcactcattgactcggttagaat |
8402461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 547 - 718
Target Start/End: Complemental strand, 8428796 - 8428626
Alignment:
| Q |
547 |
acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca |
646 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| || |||||||||||||||||||| |
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| T |
8428796 |
acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca |
8428697 |
T |
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| Q |
647 |
aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttctttaaccaagaatgcaatatcatgg |
718 |
Q |
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| T |
8428696 |
aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttctttaaccaagaatgcattctcatgg |
8428626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 154 - 496
Target Start/End: Complemental strand, 8429336 - 8428991
Alignment:
| Q |
154 |
ttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggc |
253 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| | |||||||| ||| ||| | || |||||||||| ||||||| |
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| T |
8429336 |
ttagagaattgtataatgtactcccatttttcttatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggc |
8429239 |
T |
|
| Q |
254 |
cacctagat-----ggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctct |
348 |
Q |
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||||||||| || || ||||||||||||||| ||| ||||||||||| ||| ||||||| | |||||| |||| |||||| | || ||||| || |
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| T |
8429238 |
cacctagattaggtggtcacattgaaccaagtgttaggcattgacacaacctggatagggaaacactctccaggata---acaaaa-tcatttatcccct |
8429143 |
T |
|
| Q |
349 |
aattaacaaaaaatgtcatattca----catgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaa |
444 |
Q |
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|||| || ||||||| |||||||| |||||||||||| |||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||| |
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| T |
8429142 |
aattgacgaaaaatgccatattcatatgcatgaatcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaa |
8429043 |
T |
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| Q |
445 |
tgataatgttgacgataaacattatattttgcctgcattgcaatttgagaat |
496 |
Q |
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|| ||| | ||| ||| |||||| |||||| ||||||||| ||||||| |
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| T |
8429042 |
tgccaatctcgacattaaccattatcgtttgccaccattgcaatatgagaat |
8428991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 8429445 - 8429362
Alignment:
| Q |
18 |
caacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaa |
109 |
Q |
| |
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|||||| |||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
8429445 |
caacaaactcttctgaaaacaacatttttttttt--------gtttgattcattcttttcatacgaattctttcaattattttgaaaataaa |
8429362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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