View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_11 (Length: 376)
Name: NF4015_low_11
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 26834831 - 26835191
Alignment:
| Q |
1 |
tggtgcacatgtgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagacggattcctaaaatccata |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26834831 |
tggtgcacatgcgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggattcctaaaatccata |
26834930 |
T |
|
| Q |
101 |
ttagcttgaaaaactagttaagactaagaaacaaagaacatcaaagacattacagtgtagaattgagttgaagatatcctctagattatcctaattaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26834931 |
ttagcttgaaaaactagttaagactaagaaacaaagaacatcaaagacattacagtgtagaattgagttgaagatatcctctagattatcctaattaagg |
26835030 |
T |
|
| Q |
201 |
ggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaatcttaaaagtgaagttagaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26835031 |
ggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaaccttaaaagtgaagttagaga |
26835130 |
T |
|
| Q |
301 |
gaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26835131 |
gaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
26835191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 123 - 361
Target Start/End: Original strand, 45419763 - 45420000
Alignment:
| Q |
123 |
actaagaaacaaagaacatcaaagacattacagtgtagaattgagttgaagatatcctcta--gattatcctaattaaggggttgaacaatgagaggaag |
220 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45419763 |
actaagaaacaaagaaca---aagacattacagtgtagaattcagttgaagatatcctctatagattatcctaattaaggggttgaacaatgagaggaag |
45419859 |
T |
|
| Q |
221 |
tccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaatcttaaaagtgaagttagagagaagcattgttaatactatc |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |
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| T |
45419860 |
tccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaaccttaaaagtgaagttagagagaagtattgttaacactatc |
45419959 |
T |
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| Q |
321 |
ttgtactccataaatgtcaagtttctaccaacacacattct |
361 |
Q |
| |
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| T |
45419960 |
ttgtactccataaatgtcaagtttctaccaacacacattct |
45420000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 187 - 361
Target Start/End: Original strand, 45410517 - 45410691
Alignment:
| Q |
187 |
tatcctaattaaggggttgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaatcttaaa |
286 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |||||| |
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| T |
45410517 |
tatcctaattaaggggttgaacaatgagtggaagtccatgagctggccttagggagagcatgatggctggtgaatgttgataacttggcgaaaccttaaa |
45410616 |
T |
|
| Q |
287 |
agtgaagttagagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
361 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45410617 |
agtgaagttagagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattct |
45410691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 45419609 - 45419737
Alignment:
| Q |
1 |
tggtgcacatgtgtcacagtgaagtcaatcatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagacggattcctaaaatccata |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
45419609 |
tggtgcacatgcgtcacattgaagtcaaccatttttattgcagatgaaaccttagtacatctttattgtggcaatggtagaaggatacctaaaatccata |
45419708 |
T |
|
| Q |
101 |
ttagcttgaaaaactagttaagactaaga |
129 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
45419709 |
ttagcttgaaaaactagttaagactaaga |
45419737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 361
Target Start/End: Original strand, 29799598 - 29799755
Alignment:
| Q |
204 |
tgaacaatgagaggaagtccatgagctggccttagggagagcatgatggctggtgaatgatggtaacctggcgaaatcttaaaagtgaagttagagagaa |
303 |
Q |
| |
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||||| || ||||||||||||| |||||||||||| |||||||| || ||||||||| ||| ||| ||||| |||||| | || ||||||||| |
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| T |
29799598 |
tgaacgattagaggaagtccataagctggccttagtgagagcataatacaaggtgaatgaatataatttggggaaatattaaaactaaatctagagagaa |
29799697 |
T |
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| Q |
304 |
gcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattct |
361 |
Q |
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| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
29799698 |
gaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattct |
29799755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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