View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4015_low_16 (Length: 285)

Name: NF4015_low_16
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4015_low_16
NF4015_low_16
[»] chr3 (2 HSPs)
chr3 (138-179)||(31624736-31624777)
chr3 (18-50)||(31620633-31620665)
[»] chr7 (1 HSPs)
chr7 (189-223)||(27338302-27338336)
[»] chr8 (2 HSPs)
chr8 (225-273)||(194169-194217)
chr8 (225-273)||(309006-309054)


Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 31624777 - 31624736
Alignment:
Q  138 cagaggtcaaattcctcgaactcataaccgtacaacaattat 179  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  31624777 cagaggtcaaattcctcgaactcataaccttacaacaattat 31624736  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31620665 - 31620633
Alignment:
Q  18 aattcacggtagattagactattgattgcttag 50  Q
    |||||||||||||||||||||||||||||||||    
T  31620665 aattcacggtagattagactattgattgcttag 31620633  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 27338302 - 27338336
Alignment:
Q  189 caaacagttcaattttcaatatattaaatacacaa 223  Q
    ||||||||||||||| |||||||||||||||||||    
T  27338302 caaacagttcaatttccaatatattaaatacacaa 27338336  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 194169 - 194217
Alignment:
Q  225 aaagagaaaaagataatataatctgttaaaaactaattacgtactcccc 273  Q
    ||||||||||||| |||||| || ||| |||||| ||||||||||||||    
T  194169 aaagagaaaaagaaaatatagtcggttcaaaacttattacgtactcccc 194217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 309006 - 309054
Alignment:
Q  225 aaagagaaaaagataatataatctgttaaaaactaattacgtactcccc 273  Q
    ||||||||||||| |||||| || ||| |||||| ||||||||||||||    
T  309006 aaagagaaaaagaaaatatagtcggttcaaaacttattacgtactcccc 309054  T

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