View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_20 (Length: 254)
Name: NF4015_low_20
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 5329418 - 5329665
Alignment:
| Q |
1 |
tttctaaacatgcttctcatattttctttctactacatgatcttttagaccatcaaattatgttatattagttataattgcaaaagagtggtacatttta |
100 |
Q |
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| T |
5329418 |
tttctaaacatgcttctcatattttctttctactacatgatcttttagaccatcaaattatgttatattagttataattgcaaaagagtggtacatttta |
5329517 |
T |
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| Q |
101 |
taaatcttcaataaattaatacataaaatgcactataatatgttaatggaatgaatttgatctattaaaacaagataattaacactaattttgtggtggc |
200 |
Q |
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| T |
5329518 |
taaatcttcaataaattaatacataaaatgcactataatatgttaatggaattaatttgatctattaagacaagataattaacactaattttgtggaggc |
5329617 |
T |
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| Q |
201 |
atatagaattgnnnnnnntgagattgattgagtattggtctctgctcct |
249 |
Q |
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| T |
5329618 |
atatagaattg-aaaaaatgagattgattgagtattggtttctgatcct |
5329665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 5335762 - 5335848
Alignment:
| Q |
26 |
ctttctactacatgatcttttagaccatcaaattatgttatattagttataattgcaaaagagtggtacattttataaatcttcaata |
113 |
Q |
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| T |
5335762 |
ctttatactacatgatattttagactatcaaattatattacactatttacaattggaaaagagtggtata-tttataaatcttcaata |
5335848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 5334825 - 5334901
Alignment:
| Q |
26 |
ctttctactacatgatcttttagaccatcaaattatgttatattagttataattgcaaaagagtggtacattttataaat |
105 |
Q |
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|||||||||||||||| |||||||| |||||||||| || ||| || ||||||||||||||| |||||||||||||| |
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| T |
5334825 |
ctttctactacatgatattttagactatcaaattat---atgttaattgcaattgcaaaagagtgatacattttataaat |
5334901 |
T |
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