View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4015_low_26 (Length: 238)
Name: NF4015_low_26
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21378197 - 21377980
Alignment:
| Q |
1 |
tcaaatcaaaatcaataaattgtataaaaaagaatgagcaatgtataatctctaatcatcagtgtagttgttacattaaagtatagtcaattttctctag |
100 |
Q |
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| T |
21378197 |
tcaaatcaaaatcaataaattgaatgaaaaagaatgagcaatgtataatctctaatca---gtgtagtaca-acattaaagtatagtcaattttctctag |
21378102 |
T |
|
| Q |
101 |
aggaacttgtagaaccagggttcaatagggatcaatcaatcctttatccctagaaaattctcacattatgaaacaaactattggccaatcgagggttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378101 |
aggaacttgtagaaccagggttcaatagggatcaatcaatcctttatctctagaaaattctcacattatgaaacaaactattggccaatcgagggttttc |
21378002 |
T |
|
| Q |
201 |
tgaagtagtaatagttagattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21378001 |
tgaagtagtaatagttagattt |
21377980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 21370947 - 21370914
Alignment:
| Q |
78 |
aaagtatagtcaattttctctagaggaacttgta |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||| |
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| T |
21370947 |
aaagtatagtcaattttctctagaggaacttgta |
21370914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 21371058 - 21371020
Alignment:
| Q |
20 |
ttgtataaaaaagaatgagcaatgtataatctctaatca |
58 |
Q |
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||||||||||||||||||| ||||||||||| ||||||| |
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| T |
21371058 |
ttgtataaaaaagaatgagaaatgtataatcactaatca |
21371020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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