View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4015_low_28 (Length: 227)

Name: NF4015_low_28
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4015_low_28
NF4015_low_28
[»] chr4 (10 HSPs)
chr4 (18-138)||(3267441-3267561)
chr4 (19-221)||(3258381-3258564)
chr4 (128-202)||(3258631-3258705)
chr4 (124-221)||(24490309-24490406)
chr4 (101-221)||(17359775-17359894)
chr4 (101-221)||(30564111-30564231)
chr4 (109-170)||(29237084-29237145)
chr4 (74-133)||(29085915-29085975)
chr4 (117-199)||(19725135-19725217)
chr4 (109-154)||(31531146-31531191)
[»] chr1 (5 HSPs)
chr1 (94-195)||(50098745-50098846)
chr1 (84-156)||(4632619-4632691)
chr1 (102-216)||(25187974-25188088)
chr1 (124-181)||(39747005-39747062)
chr1 (101-173)||(14724594-14724666)
[»] chr7 (5 HSPs)
chr7 (48-165)||(24169696-24169813)
chr7 (75-126)||(20932351-20932402)
chr7 (124-216)||(7874816-7874909)
chr7 (124-221)||(47761903-47762000)
chr7 (92-169)||(20932414-20932491)
[»] chr2 (4 HSPs)
chr2 (62-170)||(39543197-39543305)
chr2 (57-149)||(39542194-39542286)
chr2 (19-97)||(160391-160469)
chr2 (67-221)||(5771208-5771362)
[»] chr3 (7 HSPs)
chr3 (18-216)||(26707055-26707252)
chr3 (78-134)||(1640282-1640338)
chr3 (74-133)||(1640223-1640282)
chr3 (124-221)||(21494030-21494127)
chr3 (124-214)||(795124-795214)
chr3 (124-174)||(20810696-20810746)
chr3 (124-221)||(1740830-1740927)
[»] chr6 (6 HSPs)
chr6 (101-172)||(5600669-5600740)
chr6 (101-221)||(11956401-11956521)
chr6 (124-221)||(3902193-3902289)
chr6 (124-221)||(3902551-3902647)
chr6 (124-213)||(17281286-17281375)
chr6 (124-172)||(17290084-17290132)
[»] chr5 (3 HSPs)
chr5 (89-172)||(28221708-28221791)
chr5 (102-221)||(31987003-31987122)
chr5 (101-156)||(35679250-35679305)
[»] scaffold0067 (1 HSPs)
scaffold0067 (101-221)||(33663-33783)
[»] scaffold0027 (1 HSPs)
scaffold0027 (94-221)||(43380-43507)
[»] scaffold0054 (1 HSPs)
scaffold0054 (94-156)||(26134-26196)
[»] chr8 (1 HSPs)
chr8 (124-172)||(33848333-33848382)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 3267561 - 3267441
Alignment:
Q  18 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3267561 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 3267462  T
Q  118 tccgaatttgttacgaactct 138  Q
    |||  ||||||||||||||||    
T  3267461 tccagatttgttacgaactct 3267441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 3258564 - 3258381
Alignment:
Q  19 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3258564 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgct 3258465  T
Q  119 ccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgc 218  Q
    ||| ||                   || |||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |    
T  3258464 ccggat-------------------tataaggagagttcgcctcactcattcttcacactgaaaaacacatttgatgtttcatgtgtttttcctctcttc 3258384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 3258705 - 3258631
Alignment:
Q  128 ttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatg 202  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  3258705 ttacaaactctccttataaaaggagagctcgcctcactcattcttcacactgaaaaacacaattgatgtttcatg 3258631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 24490406 - 24490309
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||| || ||||  || | |||||| ||| |||||||||||||||| ||||    
T  24490406 tttgttacgaactctccctataaaaggagagcttgctccactcattcttcacaccgaaattcacagttgatgattcttgtgcttttcctctcttctcc 24490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 17359894 - 17359775
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttca 200  Q
    ||||||||||||||| |||||  ||||||||||||||||  ||||||||||||| | |||||||| ||| || | |||||||  |  | |||||||||||    
T  17359894 cttaatccttaagtcactccggttttgttacgaactctcactataaaaggagagttcgcctcacttattattgacactgaaattc-cagttgatgtttca 17359796  T
Q  201 tgtgcttttcctctctgctcc 221  Q
    ||||||||| |||||| ||||    
T  17359795 tgtgctttttctctcttctcc 17359775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 30564111 - 30564231
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttca 200  Q
    ||||||||||||||| |||    ||||||||||||||||| ||||||||||||||| | | ||||||||||| | || ||||  || | |||||| ||||    
T  30564111 cttaatccttaagtcactcgttttttgttacgaactctccctataaaaggagagctcgtcccactcattctttacaccgaaattcacagttgatgattca 30564210  T
Q  201 tgtgcttttcctctctgctcc 221  Q
    |||| ||||||||||| ||||    
T  30564211 tgtgtttttcctctcttctcc 30564231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 29237145 - 29237084
Alignment:
Q  109 ttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattc 170  Q
    |||||||||| || ||| |||||||| ||||| ||||||||||||||| || ||||||||||    
T  29237145 ttaagtcgcttcggattcgttacgaaatctccctataaaaggagagctcgcttcactcattc 29237084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 29085975 - 29085915
Alignment:
Q  74 attaagtttgcttaatccgcaagttagcttaatcctt-aagtcgctccgaatttgttacga 133  Q
    |||||||||| ||||||||||| |||||||||||||| ||||| ||||| |||||| ||||    
T  29085975 attaagtttgtttaatccgcaaattagcttaatccttaaagtcactccggatttgtcacga 29085915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 19725217 - 19725135
Alignment:
Q  117 ctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttc 199  Q
    ||||| |||||||||||||||||| |||||| ||| |||| |||||||| ||| | || || |||||| | | ||||||||||    
T  19725217 ctccggatttgttacgaactctccctataaatggaaagctcgcctcacttattttacacaccgaaaaatacagttgatgtttc 19725135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 31531191 - 31531146
Alignment:
Q  109 ttaagtcgctccgaatttgttacgaactctccttataaaaggagag 154  Q
    ||||||| || || |||||||||||||||||| |||||||||||||    
T  31531191 ttaagtcacttcggatttgttacgaactctccctataaaaggagag 31531146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 50098745 - 50098846
Alignment:
Q  94 aagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttga 193  Q
    ||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||    
T  50098745 aagtttgcttaatccttaagtcactccggatttgttacaaactctccttataaaaggagagcttgcctcactcattcttcagactgaaaaacacagttga 50098844  T
Q  194 tg 195  Q
    ||    
T  50098845 tg 50098846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 4632619 - 4632691
Alignment:
Q  84 cttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagct 156  Q
    |||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||| |||||    
T  4632619 cttaatccgcaagttaacttaatccttaagtcgcttcggatttgttacgaactctccctataaaaggggagct 4632691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 25187974 - 25188088
Alignment:
Q  102 ttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcat 201  Q
    |||||||||||||| |||||| ||||||| ||||||||  ||||||||||||||| || || || |||||| | || |||||| | | |||||||||  |    
T  25187974 ttaatccttaagtcactccgattttgttaagaactctcactataaaaggagagctcgcttcgcttattctttacaccgaaaaatacagttgatgttttct 25188073  T
Q  202 gtgcttttcctctct 216  Q
    |||||||||||||||    
T  25188074 gtgcttttcctctct 25188088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 39747005 - 39747062
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaa 181  Q
    ||||||||||||||| | ||||||||||||||| ||| | ||||||||||| ||||||    
T  39747005 tttgttacgaactcttcctataaaaggagagctcgcccccctcattcttcacactgaa 39747062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 14724666 - 14724594
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttc 173  Q
    |||||||||||| |  |||||  ||||||||||||||||  |||||||||||| ||  ||||||| |||||||    
T  14724666 cttaatccttaatttactccgtttttgttacgaactctcgatataaaaggagaactcacctcacttattcttc 14724594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 24169696 - 24169813
Alignment:
Q  48 aaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaa 147  Q
    ||||||||| ||| |||| |||||  ||||||||| ||||||||||||||| ||||||||||||||| ||| || |||||| ||||||||||| ||||||    
T  24169696 aaaacaaatccgcagattgcttaataattaagttttcttaatccgcaagtttgcttaatccttaagttgcttcggatttgtcacgaactctccctataaa 24169795  T
Q  148 aggagagcttgcctcact 165  Q
    ||||||||| ||| ||||    
T  24169796 aggagagctcgccccact 24169813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 20932351 - 20932402
Alignment:
Q  75 ttaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaattt 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  20932351 ttaagtttgcttaatccgcaagttagcttaatgcttaagtcgctccaaattt 20932402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 7874816 - 7874909
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactg-aaaaacaaatttgatgtttcatgtgcttttcctctct 216  Q
    ||||||||||||| ||| | ||||||||||||| |||||||| |||||||| || | ||||||| | |||||  ||||||||||| ||||||||    
T  7874816 tttgttacgaactttccctttaaaaggagagctcgcctcacttattcttcacaccgaaaaaacacagttgattcttcatgtgcttatcctctct 7874909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 47762000 - 47761903
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||||||| | ||||||| ||||||| ||| ||||||||||| | || ||||  || | |||||| ||||||||||| |||||||| ||||    
T  47762000 tttgttacgaactctgcctataaaatgagagctcgccccactcattctttacaccgaaattcacaattgatgattcatgtgcttctcctctcttctcc 47761903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 20932414 - 20932491
Alignment:
Q  92 gcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcatt 169  Q
    ||||||||| |||||||||||||| ||  | ||||||||| |||||||| |||||||| || | | ||||||||||||    
T  20932414 gcaagttagtttaatccttaagtcactatggatttgttactaactctccctataaaagaagggttcgcctcactcatt 20932491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 170
Target Start/End: Complemental strand, 39543305 - 39543197
Alignment:
Q  62 gattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcct 161  Q
    |||| |||||| | ||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||| |||| | ||||||||||||| | ||||    
T  39543305 gattgcttaaagactaagttttcttaatccgtaagttagcttaatcgttaagtcgctccaaatttgttacgagctctgcatataaaaggagagttcgcct 39543206  T
Q  162 cactcattc 170  Q
    |||| ||||    
T  39543205 cacttattc 39543197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 39542194 - 39542286
Alignment:
Q  57 tcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaag 149  Q
    ||||||||| |||||| ||||| |||| |||||| |||| ||||||||||||||||||||||||  |||| | ||||||||||| ||||||||    
T  39542194 tcgcggattgcttaaagattaaatttgtttaatctgcaatttagcttaatccttaagtcgctccagatttataacgaactctccctataaaag 39542286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 160469 - 160391
Alignment:
Q  19 ggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagt 97  Q
    ||||| ||||||||| |||| ||| || ||||||| ||||||||||| |||||  || ||||||| |||||| ||||||    
T  160469 ggaaaattctggatacatccgctcgcgtgaaaacagattcgcggattgcttaataatgaagtttgtttaatctgcaagt 160391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 5771362 - 5771208
Alignment:
Q  67 cttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactc 166  Q
    |||||| |||||||  |||||||||| | | || ||| ||||||||||| || |   |||  |||||||| ||  |||||||||||| || | ||||||     
T  5771362 cttaaagattaagtaggcttaatccggaggctaacttgatccttaagtcacttctgttttagtacgaactttcactataaaaggagaactcgtctcactt 5771263  T
Q  167 attcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||| || || |||||||| | | |||| ||| |||||||||||||||| ||||    
T  5771262 attctgcacaccgaaaaacacagtagatgcttcgtgtgcttttcctctcttctcc 5771208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 26707252 - 26707055
Alignment:
Q  18 tggaaagttctggatatatccactcacgagaaaacaaattcgcggattacttaaacattaagtttgcttaatccgcaagttagcttaatccttaagtcgc 117  Q
    |||||||||| ||||||||||||||||  || ||   || |||  ||| |||||| |||||||||| ||| || |||||||| ||||||||||||||| |    
T  26707252 tggaaagttccggatatatccactcacatgagaagcgatccgcaaattgcttaaagattaagtttgttta-tctgcaagttaacttaatccttaagtcac 26707154  T
Q  118 tccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctct 216  Q
    | |  |||||||||||| ||| | ||||||| ||||| |||||||||| |||||| | || |||||| |   |||||||||| ||| ||||||||||||    
T  26707153 ttcagatttgttacgaagtctacctataaaaagagaggttgcctcacttattctttacaccgaaaaataccgttgatgtttcctgtacttttcctctct 26707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 1640282 - 1640338
Alignment:
Q  78 agtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacgaa 134  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||    
T  1640282 agtttgcttaatccgcaagttagcttaatcattaagtcggtccggatttgttacgaa 1640338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 1640223 - 1640282
Alignment:
Q  74 attaagtttgcttaatccgcaagttagcttaatccttaagtcgctccgaatttgttacga 133  Q
    ||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||||    
T  1640223 attaagtttgcttaatctgcaagttagcttaatcattaagtcggtccggatttgttacga 1640282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 21494030 - 21494127
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||| ||| | |||||||||||| || ||| |||||||||||   || ||||  || | |||||| |||||||||||||||||||| ||||    
T  21494030 tttgttacgaattcttcctataaaaggagatctcgccccactcattcttaccaccgaaattcacagttgatgattcatgtgcttttcctctcttctcc 21494127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 795124 - 795214
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctct 214  Q
    |||||||||| |||||| |||||||||||| ||  ||||||  |||||| | |||||||  || | |||||| |||||| |||||||||||    
T  795124 tttgttacgatctctccctataaaaggagaactcccctcacctattctttacactgaaattcacagttgatgcttcatgcgcttttcctct 795214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 20810746 - 20810696
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttca 174  Q
    ||||||||||||||| | ||||||||||||||| ||| | |||||||||||    
T  20810746 tttgttacgaactcttcctataaaaggagagctcgcccccctcattcttca 20810696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 1740830 - 1740927
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||||||| | ||||||| ||||| | | |||||| |||||| | || ||||  || | |||| | |||||||||||||||||||| ||||    
T  1740830 tttgttacgaactcttcatataaaatgagagttcgtctcacttattctttacaccgaaattcacagttgaggcttcatgtgcttttcctctcttctcc 1740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 5600669 - 5600740
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattctt 172  Q
    ||||||||||||||| |||||  |||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  5600669 cttaatccttaagtcactccgtttttgttacaaactctccctataaaaggagagcttgcctcacttattctt 5600740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 11956401 - 11956521
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttca 200  Q
    ||||||||||||||| |||    ||||||||||||||| | |||||||||||||||  || ||||||||||| | || ||||  || | |||||| |||     
T  11956401 cttaatccttaagtcactcgttttttgttacgaactctacctataaaaggagagctctccccactcattctttacaccgaaattcacagttgatgattcc 11956500  T
Q  201 tgtgcttttcctctctgctcc 221  Q
    |||||||||||||||| ||||    
T  11956501 tgtgcttttcctctcttctcc 11956521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 3902289 - 3902193
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||||||| | ||||||||||||| || || ||||||||||| | |||||||  || | |||||| |||||||| ||||||||||| ||||    
T  3902289 tttgttacgaactctgcctataaaaggagag-ttcccccactcattctttacactgaaattcacaattgatgattcatgtgtttttcctctcttctcc 3902193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 3902647 - 3902551
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctctctgctcc 221  Q
    ||||||||||||||| | ||||||||||||| || || ||||||||||| | |||||||  || | |||||| |||||||| ||||||||||| ||||    
T  3902647 tttgttacgaactctgcctataaaaggagag-ttcccgcactcattctttacactgaaattcacagttgatgattcatgtgtttttcctctcttctcc 3902551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 17281286 - 17281375
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcatgtgcttttcctc 213  Q
    |||||||| |||||||| |||||||||||||||  || ||||||||||| | || ||||  || | |||||| ||| |||||||||||||    
T  17281286 tttgttacaaactctccctataaaaggagagctcaccccactcattcttaacaccgaaattcatagttgatgcttcctgtgcttttcctc 17281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 17290084 - 17290132
Alignment:
Q  124 tttgttacgaactctccttataaaaggagagcttgcctcactcattctt 172  Q
    ||||||||||||||||| | |||||||||| || ||| |||||||||||    
T  17290084 tttgttacgaactctccctgtaaaaggagatctcgccccactcattctt 17290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 28221791 - 28221708
Alignment:
Q  89 tccgcaagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattctt 172  Q
    ||||||||||| ||||||||||||||| ||| | ||||||||| ||||| || ||||||||||||||| |||||||| ||||||    
T  28221791 tccgcaagttaacttaatccttaagtcactctggatttgttactaactcgccctataaaaggagagctcgcctcacttattctt 28221708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 31987122 - 31987003
Alignment:
Q  102 ttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttcat 201  Q
    |||||||||||||| || ||  ||||||||||||||||  ||||||||||||||| |||||||| |||||| |  | |||   || | |||||||||| |    
T  31987122 ttaatccttaagtcacttcggttttgttacgaactctcactataaaaggagagctcgcctcacttattctttacgccgaagttcacagttgatgtttctt 31987023  T
Q  202 gtgcttttcctctctgctcc 221  Q
    ||| ||||||||||| ||||    
T  31987022 gtgtttttcctctcttctcc 31987003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 35679250 - 35679305
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagct 156  Q
    |||||| |||||||| |||| |||| ||||| |||||||| |||||||||||||||    
T  35679250 cttaattcttaagtctctccaaattagttacaaactctccctataaaaggagagct 35679305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 33663 - 33783
Alignment:
Q  101 cttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttgatgtttca 200  Q
    ||||||||||||||| |||    ||||||||||||| | | |||||||||||||||  || ||||||||||| | |||||||  || |||||||| ||||    
T  33663 cttaatccttaagtcactcgatttttgttacgaactatgcctataaaaggagagctcaccccactcattcttaacactgaaattcacatttgatgattca 33762  T
Q  201 tgtgcttttcctctctgctcc 221  Q
    |||||||||| ||||| ||||    
T  33763 tgtgcttttcgtctcttctcc 33783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 43507 - 43380
Alignment:
Q  94 aagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagcttgcctcactcattcttcaaactgaaaaacaaatttga 193  Q
    |||||| ||||||||||||||| ||  |  ||||||||||||||||  |||||||||||| |  ||| |||| |||||||| ||||||| ||| | ||||    
T  43507 aagttaacttaatccttaagtcactttggttttgttacgaactctcactataaaaggagatcccgccacacttattcttcacactgaaatacacaattga 43408  T
Q  194 tgtttcatgtgcttttcctctctgctcc 221  Q
    || ||  |||| ||||||||||| ||||    
T  43407 tgctttctgtgattttcctctcttctcc 43380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 26196 - 26134
Alignment:
Q  94 aagttagcttaatccttaagtcgctccgaatttgttacgaactctccttataaaaggagagct 156  Q
    |||||| |||||| |||||||  |||| |||| ||||| |||||||| |||||||||||||||    
T  26196 aagttaacttaattcttaagtttctccaaattagttacaaactctccctataaaaggagagct 26134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 33848382 - 33848333
Alignment:
Q  124 tttgttacgaa-ctctccttataaaaggagagcttgcctcactcattctt 172  Q
    ||||||||||| |||||| ||||||||||||||| |||||||| ||||||    
T  33848382 tttgttacgaaactctccctataaaaggagagctcgcctcacttattctt 33848333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University