View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4015_low_6 (Length: 421)
Name: NF4015_low_6
Description: NF4015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4015_low_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 11908974 - 11908568
Alignment:
| Q |
15 |
aatttcagcatcagttgacgaagtatcaatcgaaggtggcctttgttctaatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaatt |
114 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11908974 |
aatttcagcatcagttgatgaagtgtcaatcgaaggtggcctttgttctaatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaatt |
11908875 |
T |
|
| Q |
115 |
ttatttgtatagtctgaattttagttgcttgattatttatatttgtgtaggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11908874 |
ttatttgtatagtctgaattttagttgcttgattatttatatttgtgttggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaa |
11908775 |
T |
|
| Q |
215 |
ggaattagtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctc |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11908774 |
ggaattagtgtttaaaagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattctgaccagcctc |
11908675 |
T |
|
| Q |
315 |
atagaatctggtacataaacaatgcctaaagtgttactgaannnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccattttat |
414 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11908674 |
atagaatctggtacataaacaatgcctgaagtgttgctgaatttttttcttgaaatttcaacgtggctacttataaatgtacctttagattccattttat |
11908575 |
T |
|
| Q |
415 |
tccctct |
421 |
Q |
| |
|
||||||| |
|
|
| T |
11908574 |
tccctct |
11908568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 421
Target Start/End: Original strand, 12050020 - 12050425
Alignment:
| Q |
15 |
aatttcagcatcagttgacgaagtatcaatcgaaggtggcctttgttctaatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| |||| |||||| || ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12050020 |
aatttcagcatcagttgacgaagtctcaatccaaggtggcctttcttctgatgtcattg-gcaggtgaaaccttcaacgacttgtacttgcgttgcaatt |
12050118 |
T |
|
| Q |
115 |
ttatttgtatagtctgaattttagttgcttgattatttatatttgtgtaggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
12050119 |
ttatttgtatagtctgaattttagttgcttgattatttatatttgtgtaggtcgaggtagaagttcaacgcttaagtgttttgaaagccagtaagatgaa |
12050218 |
T |
|
| Q |
215 |
ggaattagtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctc |
314 |
Q |
| |
|
||||||||||||||| ||| | |||| ||||||| ||||||||| ||||| ||| |||||||||||||||||||||| |||||||||| ||| || ||| |
|
|
| T |
12050219 |
ggaattagtgtttaaaagacacaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagctg-tagacagattctgatcaatctc |
12050317 |
T |
|
| Q |
315 |
atagaatctggtacataaacaatgcctaaagtgttactgaa-nnnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccatttta |
413 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| |||| ||||| |||||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
12050318 |
atagaatctggtacataaataatgcctaaggtgttattgaattttttttcttgatatttcaacatggctacttataaatgtatctgtagattccatttta |
12050417 |
T |
|
| Q |
414 |
ttccctct |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
12050418 |
ttccctct |
12050425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 15580307 - 15579901
Alignment:
| Q |
15 |
aatttcagcatcagttgacgaagtatcaatcgaaggtggcctttgttctaatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaatt |
114 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | |||||||||||| | || |||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15580307 |
aatttcagcatcagttgatgaagtgtcaacccaaggtggcctttctgctgatgtcattgagcaggtgaaaccttcaacgacttgtactctcattgcaatt |
15580208 |
T |
|
| Q |
115 |
ttatttgtatagtctgaattttagttgcttgattatttatatttgtgtaggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatgaa |
214 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15580207 |
t-atttgtatagtctgaattttcattgcttggttatttatatttgtgtaggttgaggttgaagttcagcagttaaatgttttgaaagccagtaagatgaa |
15580109 |
T |
|
| Q |
215 |
ggaattagtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagcctc |
314 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
15580108 |
ggaattagtgtttaaaagacagaatgaacttgaagaaatatacagaggagttcacatggatatggatagtgaagctgctagacagactctgaccagcctc |
15580009 |
T |
|
| Q |
315 |
atagaatctggtacat-aaacaatgcctaaagtgttactgaannnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccatttta |
413 |
Q |
| |
|
| |||||||||||||| ||| ||||||||||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15580008 |
acagaatctggtacataaaattatgcctaaagtgtcattgaatttttttcttgaaatttcaatgtggctacttataaatttacctttagattccattttc |
15579909 |
T |
|
| Q |
414 |
ttccctct |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
15579908 |
ttccctct |
15579901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 8334432 - 8334656
Alignment:
| Q |
15 |
aatttcagcatcagttgacgaagtatcaatcgaaggtggcctttgttctaatgtcagtgagcaggtgaaaccttcaacgacttgtacttgcattgcaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | || |||||| | | || || | ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8334432 |
aatttcagcatcagttgacgaagtgtcaatccacgggagcctttctaatgatatcgttaagcaggtgaaaccttcaacgacttgaacttgcattgcaatt |
8334531 |
T |
|
| Q |
115 |
tta-tttgtatagtctgaattttagttgcttgattatttatatttgtgtaggttgaggttgaagttcagcgcttaaatgttttgaaagccagtaagatga |
213 |
Q |
| |
|
||| ||| ||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
8334532 |
ttaatttctatcatctgaattttagttgcttgatcatttatatttatgtaggttgatgttgaagttcagcgcttacaagttttgaatcccagtaagatga |
8334631 |
T |
|
| Q |
214 |
aggaattagtgtttaacagatagaa |
238 |
Q |
| |
|
||||||| |||||||| ||| |||| |
|
|
| T |
8334632 |
aggaatttgtgtttaaaagacagaa |
8334656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 421
Target Start/End: Original strand, 8334654 - 8334858
Alignment:
| Q |
212 |
gaaggaattagtgtttaacagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattttgaccagc |
311 |
Q |
| |
|
||||||||||| |||||| ||| |||||| ||||||||||||| | ||||||| || |||||||||||| | |||||| |||||||||| ||||| | |
|
|
| T |
8334654 |
gaaggaattagcgtttaaaagacagaatgaacttgaagaaattcatagaggagcacacatggatatggatgctaaagctgctagacagattctgaccgac |
8334753 |
T |
|
| Q |
312 |
ctcatagaatctggtacataaacaatgcctaaagtgttactgaa-nnnnnnncttgaaatttcaacgtggctacttataaatgtacctttagattccatt |
410 |
Q |
| |
|
|||||| ||||||||||| || ||| ||||||| |||| |||||||||| ||||||||||| || ||||||||| |||| |||| || |
|
|
| T |
8334754 |
ctcata------ggtacataaactatccctgaagtgttgttgaattttttttcttgaaatttaaacgtggctacgtacaaatgtaccattagcttccgtt |
8334847 |
T |
|
| Q |
411 |
ttattccctct |
421 |
Q |
| |
|
|| |||||||| |
|
|
| T |
8334848 |
ttcttccctct |
8334858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University